Locus 5547

Sequence ID dm3.chr3LHet
Location 487,516 – 487,608
Length 92
Max. P 0.999766
window7620

overview

Window 0

Location 487,516 – 487,608
Length 92
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 55.13
Shannon entropy 0.62791
G+C content 0.48591
Mean single sequence MFE -31.77
Consensus MFE -15.04
Energy contribution -16.50
Covariance contribution 1.46
Combinations/Pair 1.46
Mean z-score -3.32
Structure conservation index 0.47
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 4.34
SVM RNA-class probability 0.999766
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3LHet 487516 92 - 2555491
-----------UACAAAGAGGAUAACUGGAGGCGCUUAGUGGGAGAGAAUAAGGACGAUCCAUGGGGGCAAGUCUUUAGAAUUUUCCGUGGCCGCAAAAGGAC----
-----------..............((....(((((...(((((((...(((((((..(((....)))...)))))))...))))))).)).)))....))..---- ( -23.40, z-score =  -1.23, R)
>droAna3.scaffold_13266 19317466 97 - 19884421
---------GAGAGAGAGAAGAUGGGUGGCGCAUUUUCGUAGAACAAAAUAAGCACGAUCCUUGGGGUCGUGUUUACAAAGUUCUGCGGGAGAGUGGUA-AGAAUUG
---------...........(((...((.(((.((..((((((((....((((((((((((...))))))))))))....))))))))..)).))).))-...))). ( -36.00, z-score =  -5.85, R)
>droGri2.scaffold_15040 118951 107 - 162499
UGCUUGUAAGAGUGAAAGAGGAUGAAUGGCGUUCCUUUUUGGAGCGCAAUAAGGACGACCCCUGGGGUCGUGCUUAUAAAGUUGUGAGAGGUAGGCGUAGGGAAGCG
.((((.(....((...............(((((((.....))))))).(((((.(((((((...))))))).))))).................))....).)))). ( -35.90, z-score =  -2.89, R)
>consensus
_________GAGAGAAAGAGGAUGAAUGGCGCACCUUAGUGGAACAAAAUAAGGACGAUCCAUGGGGUCGUGUUUAUAAAGUUCUGCGAGGCAGCAGUAGGGAA__G
.................................((((((((((((...(((((.(((((((...))))))).)))))...))))))))))))............... (-15.04 = -16.50 +   1.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:34 2011