| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 486,108 – 486,220 |
| Length | 112 |
| Max. P | 0.917943 |
| Location | 486,108 – 486,220 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 62.28 |
| Shannon entropy | 0.62949 |
| G+C content | 0.47576 |
| Mean single sequence MFE | -32.63 |
| Consensus MFE | -15.30 |
| Energy contribution | -15.18 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.917943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 486108 112 - 2555491 UGUCAGGUCUGAGCUGAACUCAUAAGAUGGCGAGACUGGAAGAAUGCUUACUAAGCGCAUGGCAGCGCAGAUGGGACAACCCUGAGUAAGAUUGAG--AUUGAGUAAGAUAACC ((((.(((((..(((.............))).))))).........((((((..((((......))))....(((....)))..))))))......--.........))))... ( -25.92, z-score = -0.14, R) >droAna3.scaffold_13274 90498 114 + 320451 UGGAGAGUUUUGGGCCAAGUGAAUGGAAGUCUAUGUUGCGUGAAUGUGUCCUGUCGGACUGGCAAGCCCGAUGGGAUAAUAGUGAGAAUGGGCGGGCCACUUACGAGUUCAUUC ..........(((((...((((.(((..((((((.(..(.......(((((((((((.((....)).)))))))))))...)..)..))))))...))).))))..)))))... ( -37.50, z-score = -1.79, R) >droVir3.scaffold_12737 3087 114 + 48473 UGGAGAGUUUAGGGCUUAGUGAAUGCAAGAGAUUGGUGAAAGAGUGUGUUUUGUCUGACUGGCAACUCAGAUGGGACACUAGCGUGAAUGGGCGUGUCACUCAUCGGUUUAUAC ..((((((...(.(((((....((((..........(....)...((((((..(((((..(....))))))..))))))..))))...))))).)...)))).))......... ( -31.10, z-score = -0.77, R) >droGri2.scaffold_15040 117372 114 - 162499 UGGAGAGUUUAGGGCUUAGUGAGUGCAAGAAAUUGCUAAAUGAGUGUGUUCUGUCUGACUGGCAGGUCAGAUGGGAUACUAGCGAGAAUGGGAGGGUCACUCAUAGGUUUAUUC ...........(((((((.(((((((((....))))....((...(((((((((((((((....)))))))))))))))...))..............)))))))))))).... ( -36.00, z-score = -2.89, R) >consensus UGGAGAGUUUAGGGCUAAGUGAAUGCAAGACAAUGCUGAAAGAAUGUGUUCUGUCUGACUGGCAACUCAGAUGGGACAAUAGCGAGAAUGGGCGGGUCACUCAUAAGUUUAUUC ...........((((...((((.......................(((((((((((((((....)))))))))))))))...........((....))..))))..)))).... (-15.30 = -15.18 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:28 2011