| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 482,938 – 483,043 |
| Length | 105 |
| Max. P | 0.921048 |
| Location | 482,938 – 483,043 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 56.73 |
| Shannon entropy | 0.60812 |
| G+C content | 0.43091 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -4.88 |
| Energy contribution | -5.90 |
| Covariance contribution | 1.02 |
| Combinations/Pair | 1.56 |
| Mean z-score | -3.50 |
| Structure conservation index | 0.15 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.921048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 482938 105 + 2555491 UAUUAUCGGCUUUUGUUUUGUCUUGUAUAUAAGACAAUACACCAGACGAUGUUUGAUCAGGGGAAAGCCGAGAAACGAAAAUUUGUUUCUUUAGUGGAACCACCG .....(((((((((((.((((((((....)))))))).))..(((((...))))).......)))))))))(((((((....)))))))....(((....))).. ( -31.70, z-score = -3.73, R) >droVir3.scaffold_12958 274227 102 - 3547706 ---CGCUAGCAGAAGAUUUGCUAGCAAUAUAGGCUGCCAAUGACUCAGAAGUGGUGUCCGACGAAAGUCGAGACACAAAAACUUGCCUACGAGGGGCAACUACCG ---.(((((((((...)))))))))....(((..((((..........((((.(((((((((....)))).)))))....)))).((.....)))))).)))... ( -40.20, z-score = -5.16, R) >droMoj3.scaffold_6498 2833144 102 + 3408170 ---CAUUAGCCGAAGUCUUGCUUGCAAUAAAAGCAGAUACUGCCUCACAUGUCGUAUCAGAUGAAAGCCUAGAUAAAAAUAUUUGCUUUCGAGGAGAGACGACAG ---........(..(((((((((.......)))))....((.((((....(((......)))((((((..(((((....)))))))))))))))))))))..).. ( -24.40, z-score = -1.62, R) >consensus ___CAUUAGCAGAAGUUUUGCUUGCAAUAUAAGCAGAUACUGCCUCAGAUGUCGUAUCAGACGAAAGCCGAGAAACAAAAAUUUGCUUACGAGGAGAAACCACCG .......(((.........)))............................((((((((((((....)))).))).............(((.....)))))))).. ( -4.88 = -5.90 + 1.02)
| Location | 482,938 – 483,043 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 56.73 |
| Shannon entropy | 0.60812 |
| G+C content | 0.43091 |
| Mean single sequence MFE | -29.73 |
| Consensus MFE | -5.75 |
| Energy contribution | -5.77 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.53 |
| Mean z-score | -3.06 |
| Structure conservation index | 0.19 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.874429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 482938 105 - 2555491 CGGUGGUUCCACUAAAGAAACAAAUUUUCGUUUCUCGGCUUUCCCCUGAUCAAACAUCGUCUGGUGUAUUGUCUUAUAUACAAGACAAAACAAAAGCCGAUAAUA .((((....))))...(((((........)))))((((((((..((.(((........))).))(((.(((((((......))))))).)))))))))))..... ( -29.50, z-score = -4.45, R) >droVir3.scaffold_12958 274227 102 + 3547706 CGGUAGUUGCCCCUCGUAGGCAAGUUUUUGUGUCUCGACUUUCGUCGGACACCACUUCUGAGUCAUUGGCAGCCUAUAUUGCUAGCAAAUCUUCUGCUAGCG--- .(((....)))....((((((((((....(((((.((((....))))))))).))))....((.....)).))))))...(((((((.......))))))).--- ( -34.60, z-score = -3.26, R) >droMoj3.scaffold_6498 2833144 102 - 3408170 CUGUCGUCUCUCCUCGAAAGCAAAUAUUUUUAUCUAGGCUUUCAUCUGAUACGACAUGUGAGGCAGUAUCUGCUUUUAUUGCAAGCAAGACUUCGGCUAAUG--- .((((((.((.....((((((..(((....)))....))))))....)).))))))(((...((((((........))))))..)))((.(....)))....--- ( -25.10, z-score = -1.47, R) >consensus CGGUAGUUCCACCUCGAAAGCAAAUUUUUGUAUCUCGGCUUUCAUCUGAUACAACAUCUGAGGCAGUAUCAGCUUAUAUUGCAAGCAAAACUUCAGCUAAUG___ .(((((........................((((.(((......)))))))............(((((........)))))............)))))....... ( -5.75 = -5.77 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:27 2011