| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 434,694 – 434,761 |
| Length | 67 |
| Max. P | 0.597963 |
| Location | 434,694 – 434,761 |
|---|---|
| Length | 67 |
| Sequences | 4 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 58.21 |
| Shannon entropy | 0.69411 |
| G+C content | 0.44657 |
| Mean single sequence MFE | -15.52 |
| Consensus MFE | -8.43 |
| Energy contribution | -8.55 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.30 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.597963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 434694 67 - 2555491 UUAAGAACAAAGGCAACGUCCCUCUUGCAUUCUUUUCUAGCAGAAACAGUUGCUGCAUGAAUCAAAA---- .......((..((((((.....(((.((...........)))))....))))))...))........---- ( -10.40, z-score = 0.13, R) >droYak2.chrU 15642946 67 - 28119190 CUAAGAACACUGGCCAGAUCUACAAGCUUUUUUUUUCGCGCAGCCAUGCUCGCUGCAUGAAUAAGCA---- .........................((((.....((((.(((((.......))))).)))).)))).---- ( -13.90, z-score = 0.18, R) >droPer1.super_3369 3649 66 + 5027 -UUAGCACAAAAGUGAGGUCGUGUUUGCCUCGCUUUCGUGCGGCAAUGCUAGCCGCUUGAAUCAAUA---- -...((((.((((((((((.......)))))))))).))))(((.......))).............---- ( -25.00, z-score = -3.05, R) >droMoj3.scaffold_6540 29648485 71 + 34148556 UUAAGAACAGCAGCAAGAUCAAUCUUUCCCUCUUUGCGCGCAGCGGUGCAUGCAGCUUGCAUUAAUAAAGA .........(((((((((....))))........((((.(((....))).)))))).)))........... ( -12.80, z-score = 1.56, R) >consensus UUAAGAACAAAAGCAAGAUCAAUCUUGCCUUCUUUUCGCGCAGCAAUGCUUGCUGCAUGAAUCAAUA____ ..................................((((.(((((.......))))).)))).......... ( -8.43 = -8.55 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:21 2011