| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,935,853 – 3,935,917 |
| Length | 64 |
| Max. P | 0.924603 |
| Location | 3,935,853 – 3,935,917 |
|---|---|
| Length | 64 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 99.37 |
| Shannon entropy | 0.01128 |
| G+C content | 0.37976 |
| Mean single sequence MFE | -10.19 |
| Consensus MFE | -10.19 |
| Energy contribution | -10.19 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3935853 64 - 23011544 AAACAAAUAACCAGAGAUGGUCCCUUGAAAAAGGAGAACAAAACAAAUGCAAUCUCACUUAGCC .............(((((..((((((....)))).))..............)))))........ ( -10.19, z-score = -1.60, R) >droEre2.scaffold_4929 3993744 63 - 26641161 -AACAAAUAACCAGAGAUGGUCCCUUGAAAAAGGAGAACAAAACAAAUGCAAUCUCACUUAGCC -............(((((..((((((....)))).))..............)))))........ ( -10.19, z-score = -1.63, R) >droYak2.chr2L 3950089 63 - 22324452 -AACAAAUAACCAGAGAUGGUCCCUUGAAAAAGGAGAACAAAACAAAUGCAAUCUCACUUAGCC -............(((((..((((((....)))).))..............)))))........ ( -10.19, z-score = -1.63, R) >droSec1.super_5 2038825 63 - 5866729 -AACAAAUAACCAGAGAUGGUCCCUUGAAAAAGGAGAACAAAACAAAUGCAAUCUCACUUAGCC -............(((((..((((((....)))).))..............)))))........ ( -10.19, z-score = -1.63, R) >droSim1.chr2L 3890853 63 - 22036055 -AACAAAUAACCAGAGAUGGUCCCUUGAAAAAGGAGAACAAAACAAAUGCAAUCUCACUUAGCC -............(((((..((((((....)))).))..............)))))........ ( -10.19, z-score = -1.63, R) >consensus _AACAAAUAACCAGAGAUGGUCCCUUGAAAAAGGAGAACAAAACAAAUGCAAUCUCACUUAGCC .............(((((..((((((....)))).))..............)))))........ (-10.19 = -10.19 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:58 2011