| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 416,128 – 416,218 |
| Length | 90 |
| Max. P | 0.812563 |
| Location | 416,128 – 416,218 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 62.50 |
| Shannon entropy | 0.52377 |
| G+C content | 0.52097 |
| Mean single sequence MFE | -28.97 |
| Consensus MFE | -16.24 |
| Energy contribution | -15.70 |
| Covariance contribution | -0.54 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812563 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 416128 90 + 2555491 -ACCGGCGCGAGUUUGCUGCUCGGCAUAUAGCUGGCCGGGUUGGCCCUGUUGCUUGUGCUGCCUACUAAAGUGUGGGUUCUUUGACCCGCU -...(((.(((((.....)))))(((((.(((.(((.(((....))).))))))))))).))).........(((((((....))))))). ( -36.10, z-score = -1.28, R) >droSim1.chr4 903134 84 - 949497 UGUCGUUGUUUUUGUAAUUUUUGACAUUUUGCGGGUCGGCGUGAGCCUGUGCCUUAUGCUGCCUAUUGAAAUACGGAUUUUUGG------- ..((((.(((((.((((...........))))(((.(((((((((.......))))))))))))...)))))))))........------- ( -18.50, z-score = -0.32, R) >droYak2.chr2L_random 2211614 88 - 4064425 -ACUGGCGCGAGUUUGCUGCUCGGCGUUUCGCUGGCCGUAUUGGCCUUGCUGCUUGUGCUGCCUACUAAAAUGUAGGUUCUU--ACCCACU -...(((((((((..((.....((((...))))((((.....))))..)).)))))))))((((((......))))))....--....... ( -32.30, z-score = -2.20, R) >consensus _ACCGGCGCGAGUUUGCUGCUCGGCAUUUAGCUGGCCGGAUUGGCCCUGUUGCUUGUGCUGCCUACUAAAAUGUGGGUUCUU_GACCC_CU ....(((((((((.....(((((((.........))))....)))......)))))))))((((((......))))))............. (-16.24 = -15.70 + -0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:20 2011