| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 408,000 – 408,052 |
| Length | 52 |
| Max. P | 0.612144 |
| Location | 408,000 – 408,052 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 90.38 |
| Shannon entropy | 0.16708 |
| G+C content | 0.50769 |
| Mean single sequence MFE | -14.26 |
| Consensus MFE | -12.68 |
| Energy contribution | -11.92 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 408000 52 + 2555491 CAACGAGGGACGUGCCUUUUGGGGUCGGUUCCCAAUGCUGAUUCUCGAUUUC ...((((((.((.((...((((((.....)))))).)))).))))))..... ( -16.40, z-score = -1.17, R) >droEre2.scaffold_4845 18194194 52 + 22589142 CACUGAGCGACGUGCCUUUUGGGGACGUUUUUUAAUGCUGAUACUUGAUUUC ((.((((.(((((.((.....)).))))).)))).))............... ( -10.60, z-score = -1.50, R) >droYak2.chr2R 9352795 52 + 21139217 CACUGAGGGACGUGCCUUUUGGGGACGUUUCCUAAUGCUGCUUCUCGAUUUC .....((((((((.((.....)).))).)))))................... ( -12.30, z-score = -0.61, R) >droSec1.super_1 9060609 52 - 14215200 CAACGAGGGACGUGCCUUUUGGGGACGUUUCCCAAUGCUGAUUCUCGAUUUC ...((((((.((.((...(((((((...))))))).)))).))))))..... ( -16.00, z-score = -1.58, R) >droSim1.chr2R 13470145 52 - 19596830 CAACGAGGGACGUGCCUUUUGGGGACGUUUCCCAAUGCUGAUUCUCGAUUUC ...((((((.((.((...(((((((...))))))).)))).))))))..... ( -16.00, z-score = -1.58, R) >consensus CAACGAGGGACGUGCCUUUUGGGGACGUUUCCCAAUGCUGAUUCUCGAUUUC ...((((((.((.((...((((((.....)))))).)))).))))))..... (-12.68 = -11.92 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:18 2011