| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 326,343 – 326,413 |
| Length | 70 |
| Max. P | 0.889027 |
| Location | 326,343 – 326,413 |
|---|---|
| Length | 70 |
| Sequences | 3 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 52.86 |
| Shannon entropy | 0.67605 |
| G+C content | 0.43971 |
| Mean single sequence MFE | -15.03 |
| Consensus MFE | -9.58 |
| Energy contribution | -7.60 |
| Covariance contribution | -1.98 |
| Combinations/Pair | 1.65 |
| Mean z-score | -0.46 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 326343 70 - 2555491 UUCUUCCCAGGUAUGUACACUAUAUAUUGGUUUGACCGUCCCUCCAGAAGGGGAGGUGGAGUCUUAAUUG .........((((((((...))))))))(..((.(((..((((.....))))..))).))..)....... ( -17.40, z-score = 0.23, R) >droSec1.super_40 10291 61 + 298270 GUGUUUCCUGGUAUAUCCACAAUAUACAGGCUAUACCGUACUUCCAAACGAGGAGGUGGAG--------- .....(((.((((((.((..........)).))))))..((((((......))))))))).--------- ( -18.00, z-score = -1.87, R) >droWil1.scaffold_181148 1440566 67 + 5435427 ---CUUUCUAAUAAUUUUAUUUCUUAUAGGCUUGAUCGUGUUGGUCGUCGUGGCGGUGGAGUACUCAUUG ---..........................((((.(((((..((.....))..))))).))))........ ( -9.70, z-score = 0.26, R) >consensus _U_UUUCCUGGUAUAUACACUAUAUAUAGGCUUGACCGUACUUCCAGACGAGGAGGUGGAGU__U_AUUG ......((((.(((((.....))))))))).....(((..(((((......))))))))........... ( -9.58 = -7.60 + -1.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:16 2011