| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 275,634 – 275,710 |
| Length | 76 |
| Max. P | 0.812282 |
| Location | 275,634 – 275,710 |
|---|---|
| Length | 76 |
| Sequences | 4 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 54.58 |
| Shannon entropy | 0.70753 |
| G+C content | 0.55564 |
| Mean single sequence MFE | -25.57 |
| Consensus MFE | -11.29 |
| Energy contribution | -10.85 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.76 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 275634 76 - 2555491 UCUCUUCGCUCCA---CGACUUGUGAGCCGAAGCAGGCAGAGAGGGAGAGCAAGAACGCGGUCUGUCGUUCGCUGAGGG--- ...((((((((..---(..(((....(((......))).)))..)..))))..((((((.....).)))))...)))).--- ( -22.00, z-score = 1.69, R) >droAna3.scaffold_13250 1321033 82 - 3535662 ACUGCGCACUCCAGGUUAAUGCACUGCUUGUGCCUGGGAGAGCGGGAGAGCAUGAUCCUGCACGCUCUUCGUUUGCAACGAA ..(((((.((((((((....((...))....)))).)))).)).(((((((.((......)).)))))))....)))..... ( -29.50, z-score = -1.06, R) >droEre2.scaffold_4784 2076151 71 + 25762168 -----UAACUCCA---UAAUGUAGGAGUUGGGGUGAACAGAGAGGGUGAAAAAGAGCUCGCUCUCUUGCUGUCGACGGU--- -----(((((((.---.......)))))))..((..(((((((((((((........)))))))))..))))..))...--- ( -24.80, z-score = -2.80, R) >droYak2.chrU 11348212 71 + 28119190 -----UAACUCCA---UGAUGCGGGAGUUGGGGUGAGCAGAGAGGGUAAGCAAGAGCUGGCUCUCUUGCUGUCGACGGU--- -----(((((((.---.......)))))))..((..(((((((((((.(((....))).)))))))..))))..))...--- ( -26.00, z-score = -1.78, R) >consensus _____UAACUCCA___UAAUGCAGGAGUUGGGGCGAGCAGAGAGGGAGAGCAAGAGCUCGCUCUCUCGCUGUCGACGGU___ ...................(((....(((......))).(((((((((((......))))))))))).......)))..... (-11.29 = -10.85 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:14 2011