Locus 5532

Sequence ID dm3.chr3LHet
Location 258,597 – 258,671
Length 74
Max. P 0.994937
window7594

overview

Window 4

Location 258,597 – 258,671
Length 74
Sequences 6
Columns 74
Reading direction reverse
Mean pairwise identity 82.70
Shannon entropy 0.33267
G+C content 0.58559
Mean single sequence MFE -26.02
Consensus MFE -19.85
Energy contribution -19.72
Covariance contribution -0.14
Combinations/Pair 1.25
Mean z-score -2.80
Structure conservation index 0.76
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.75
SVM RNA-class probability 0.994937
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3LHet 258597 74 - 2555491
CAGCUAUAGUCACUGAUCGUGGCCACCAUCUGGUCCCGAUACGCAAUCUGUAACACACCACAGCUACAAAGGCG
..(.(((((......((((.(((((.....))))).)))).......))))).)........(((.....))). ( -16.12, z-score =  -0.61, R)
>droSim1.chrU 5586829 74 - 15797150
CAGCUAUAGUCACCGAUCGUGGCCACCACCUGGUCCAGAUCCGCACUCUGUACCACACCACAGCUACAGAGGCG
..............((((.((((((.....))).)))))))(((.(((((((.(........).)))))))))) ( -22.90, z-score =  -2.36, R)
>droSec1.super_75 105811 74 + 156374
CAGCCAUAGUCGCCGAUCGGGGCCACCACCUGGUCCUGAUCUGCACUCUGUACCACACCACAGCUACAGAGACG
........(((((.(((((((((((.....))))))))))).))..((((((.(........).))))))))). ( -30.80, z-score =  -4.34, R)
>droYak2.chrU 26223439 74 + 28119190
GAGCUGUAGGCACCGAUCGUGGCCACCACCUGGUCCCGAUCCGCACUCUGUACCACACCACAGCUACAGAGGCG
..((.....))...(((((.(((((.....))))).)))))(((.(((((((.(........).)))))))))) ( -27.00, z-score =  -2.23, R)
>droEre2.scaffold_4784 1742119 74 + 25762168
GAACUAUAGUCACCGAUCGUGGCCACCACCUGGUCCCGAUCCGCACUCUGUACCACACCACAGCUACAGAGGCG
..............(((((.(((((.....))))).)))))(((.(((((((.(........).)))))))))) ( -25.50, z-score =  -3.66, R)
>droAna3.scaffold_13417 814771 74 + 6960332
GCAUCAUGAUCACUGAUCGUGGCCACCACCUGGUCUUGAUCGGUGCUCUGCAGUGCUACACGACUGUAGAGGCA
((........(((((((((.(((((.....))))).)))))))))(((((((((........))))))))))). ( -33.80, z-score =  -3.60, R)
>consensus
CAGCUAUAGUCACCGAUCGUGGCCACCACCUGGUCCCGAUCCGCACUCUGUACCACACCACAGCUACAGAGGCG
..............(((((.(((((.....))))).))))).((.(((((((.(........).))))))))). (-19.85 = -19.72 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:13 2011