| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 231,715 – 231,765 |
| Length | 50 |
| Max. P | 0.670859 |
| Location | 231,715 – 231,765 |
|---|---|
| Length | 50 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 83.08 |
| Shannon entropy | 0.30572 |
| G+C content | 0.30512 |
| Mean single sequence MFE | -8.96 |
| Consensus MFE | -6.21 |
| Energy contribution | -6.10 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 231715 50 - 2555491 CUGUGAUUUUGGAACCAAAUUUUCACCUAAAAAUAAAGAGAAAUCACAAA------ .(((((((((((((......))))..((........)).)))))))))..------ ( -7.90, z-score = -1.59, R) >droEre2.scaffold_4784 23837377 50 - 25762168 CUGUGAUUUUGGAACCAAAUUUUGACCUAAAAGUAAAGAGAAAUUACAAA------ .(((((((((........(((((......))))).....)))))))))..------ ( -6.42, z-score = -0.96, R) >droYak2.chrUh 627509 50 - 720513 CUGUGAUUUUGGAACCAAAUUUUCACCUGAAAAUAAAGAGAAAUCACAAA------ .(((((((((........((((((....)))))).....)))))))))..------ ( -11.22, z-score = -2.84, R) >droSec1.super_75 31728 50 + 156374 CUGUGAUUUUGGAACCAAAUUUUCACCUAAAAAUAAAGAGAAAUCACAAA------ .(((((((((((((......))))..((........)).)))))))))..------ ( -7.90, z-score = -1.59, R) >droSim1.chr2h_random 1833707 50 + 3178526 CUGUGAUUUUGGAACCAAAUUUUCACCUAAAAAUAAAGAGAAAUCACAAA------ .(((((((((((((......))))..((........)).)))))))))..------ ( -7.90, z-score = -1.59, R) >triCas2.ChLG7 8347393 56 + 17478683 CGGUGGUUCUGGAACCAGAUUUUCACCUGCAACAACAAAAUCAUCGCUUGAAAAAA .(((((.((((....))))...))))).............(((.....)))..... ( -12.40, z-score = -1.63, R) >consensus CUGUGAUUUUGGAACCAAAUUUUCACCUAAAAAUAAAGAGAAAUCACAAA______ .(((((((((........(((((......))))).....)))))))))........ ( -6.21 = -6.10 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:12 2011