| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 209,392 – 209,446 |
| Length | 54 |
| Max. P | 0.970685 |
| Location | 209,392 – 209,446 |
|---|---|
| Length | 54 |
| Sequences | 10 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 78.56 |
| Shannon entropy | 0.47544 |
| G+C content | 0.54172 |
| Mean single sequence MFE | -13.64 |
| Consensus MFE | -10.36 |
| Energy contribution | -10.29 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.970685 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 209392 54 + 2555491 CAAACGAAACAUCGACACAAAAUACCGUAUCUACAGCAGCCGCGGCAGCGGUUG ....(((....)))......................(((((((....))))))) ( -12.20, z-score = -1.66, R) >droGri2.scaffold_14906 349221 54 - 14172833 UAAACGAUAUAUCGACACAGAACACGGUUACCGCUGCAGCCGCUGUCGCGGUUG ....(((....)))...(((....(((...))))))(((((((....))))))) ( -12.90, z-score = -0.32, R) >droMoj3.scaffold_6540 33190328 54 - 34148556 CAAACGACACCUCACCACAAAACUCGGUUUCUCCUGCAGCCGCUGUCGCGGUUG .....((.(((..............))).)).....(((((((....))))))) ( -12.54, z-score = -1.33, R) >droVir3.scaffold_13047 350524 54 + 19223366 CAAACGAUACAUCAACACAGAACUCGGUUUCUGCGGCGGCCGCUGUCGCGGUUG ...............(.(((((......))))).).(((((((....))))))) ( -14.00, z-score = -0.42, R) >droWil1.scaffold_181089 694478 54 - 12369635 AGCACGAAACAUUGACACAGGACACGGUAUCAACAGCAGCCGCCGCAGCGGUUG ...........((((.((.(....).)).))))...(((((((....))))))) ( -12.50, z-score = -0.68, R) >droPer1.super_6 520088 54 + 6141320 CAAACGAAACAUCGGCACAGAACCCGAUUUCAACAGCAGCCGCUGUAGCGGUUG .....(((..(((((........)))))))).....(((((((....))))))) ( -16.40, z-score = -2.73, R) >droAna3.scaffold_13082 1944740 51 + 3919855 --UAAUAGACA-CGACUCAAAAUACGGUGUCUUCGGCAACCGCUGCAGCGGUUG --....(((((-(.............))))))....(((((((....))))))) ( -16.22, z-score = -2.61, R) >droEre2.scaffold_4784 23819461 54 + 25762168 CAAACGAAACAUCGACACAAAAUACCGUAUCUACAGCAGCCGCGGCAGCGGUUG ....(((....)))......................(((((((....))))))) ( -12.20, z-score = -1.66, R) >droYak2.chrUh 608102 54 + 720513 CAAACGAAACAUCGACACAAAAUACCGUAUCUACCGCAGCCGCGGCAGCGGUGG ....(((....)))................(((((((.((....)).))))))) ( -15.20, z-score = -2.12, R) >droSec1.super_75 11333 54 - 156374 CAAACGAAACAUCGACACAAAAUACCGUAUCUACAGCAGCCGCGGCAGCGGUUG ....(((....)))......................(((((((....))))))) ( -12.20, z-score = -1.66, R) >consensus CAAACGAAACAUCGACACAAAACACGGUAUCUACAGCAGCCGCUGCAGCGGUUG ....................................(((((((....))))))) (-10.36 = -10.29 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:11 2011