Sequence ID | dm3.chr3LHet |
---|---|
Location | 171,704 – 171,793 |
Length | 89 |
Max. P | 0.904051 |
Location | 171,704 – 171,793 |
---|---|
Length | 89 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 59.15 |
Shannon entropy | 0.65113 |
G+C content | 0.45034 |
Mean single sequence MFE | -28.88 |
Consensus MFE | -6.25 |
Energy contribution | -10.00 |
Covariance contribution | 3.75 |
Combinations/Pair | 1.39 |
Mean z-score | -2.76 |
Structure conservation index | 0.22 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.904051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 171704 89 + 2555491 --------GACCUAGCAAAGGGUAAAAAUCUAAAUUACUUUUGUGAUGCUUGCCUUGUGGUUGCGAACGAGAUGAAAUCGUUUAUGCGCCAAACUAA --------....(((...(((((((..(((((((.....)))).)))..))))))).((((.((((((((.......))))))..))))))..))). ( -20.00, z-score = -1.35, R) >dp4.Unknown_group_18 10214 95 - 50799 GCGUAGUCGACCUCAUAAAGACUC--GGUCCCAACUGGACCUGUUGGGACUGCAGAGCGAUUGAGAACGACAUGCUGGUUUUUAUGAGACAGACUCA ..(.((((...((((((((((((.--(((((((((.......)))))))))(((...((........))...))).))))))))))))...))))). ( -37.80, z-score = -4.19, R) >droPer1.super_57 65797 95 - 429542 GCGUAGUCGACCUCAUAAAGACUC--GGUCCCAACUGGACCUGUUGGGACUGCAGAGCGAUUGAGAACGACAUGCUGGUUUUUAUGAGACAGACUCA ..(.((((...((((((((((((.--(((((((((.......)))))))))(((...((........))...))).))))))))))))...))))). ( -37.80, z-score = -4.19, R) >droWil1.scaffold_181145 88529 83 + 2682060 --------GAUCAAAAAAAG------GGUCUCAAAUUUGGAUGUGAGUCAUGCCGGAUCGUGGAAGAUGAAAUGGAAUUUUUCAUGCGGCAAACAAA --------((((........------)))).....(((((((....))).(((((...((((((((((........)))))))))))))))..)))) ( -19.90, z-score = -1.30, R) >consensus ________GACCUAAUAAAGACUC__GGUCCCAACUGGACCUGUGAGGACUGCAGAGCGAUUGAGAACGACAUGCAAGUUUUUAUGAGACAAACUAA ...........((((((((((((...(((((((((.......)))))))))......((........)).......))))))))))))......... ( -6.25 = -10.00 + 3.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:08 2011