| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 86,168 – 86,251 |
| Length | 83 |
| Max. P | 0.653308 |
| Location | 86,168 – 86,251 |
|---|---|
| Length | 83 |
| Sequences | 3 |
| Columns | 85 |
| Reading direction | forward |
| Mean pairwise identity | 54.55 |
| Shannon entropy | 0.64317 |
| G+C content | 0.51112 |
| Mean single sequence MFE | -22.63 |
| Consensus MFE | -9.95 |
| Energy contribution | -10.07 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 86168 83 + 2555491 -AGAACCACAGCAUGUUGGUUGUCAUAUCAAGGUGAGGUAUGCGGCAGCGAGUGCCGAGAACCCUGAUGCAAGUGGAACUUGCG- -.......((((((.(((((......))))).))).(((...(((((.....)))))...))))))..(((((.....))))).- ( -25.60, z-score = -0.85, R) >droSim1.chrU 5263221 84 + 15797150 AGAACCCUAGGAAUGCUUAUCAUAUUGAUUAGGUGAGCUGUGCGGCUACGAGAGCCGU-AGUAGUAGAGCGAAAAGUAGCCUCGC ........(((..(((((.((.((((.....)))).(((.(((.((((((.....)))-))).))).))))).))))).)))... ( -22.60, z-score = -0.69, R) >droSec1.super_86 55327 66 - 128402 ------------------AGCAUAUUGAUUAAGUGAGCUGUGCGGCUACGAGAGCCGU-AGUAGUAGAGCGAGAAGUAGCCUCGC ------------------(((.((((.....)))).))).(((((((.....))))))-)........(((((.......))))) ( -19.70, z-score = -1.45, R) >consensus ___A_CC___G_AUG_U_AUCAUAUUGAUUAGGUGAGCUGUGCGGCUACGAGAGCCGU_AGUAGUAGAGCGAGAAGUAGCCUCGC ................................((..((((.((((((.....))))))...))))...))............... ( -9.95 = -10.07 + 0.11)
| Location | 86,168 – 86,251 |
|---|---|
| Length | 83 |
| Sequences | 3 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 54.55 |
| Shannon entropy | 0.64317 |
| G+C content | 0.51112 |
| Mean single sequence MFE | -17.89 |
| Consensus MFE | -8.54 |
| Energy contribution | -9.10 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.653308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 86168 83 - 2555491 -CGCAAGUUCCACUUGCAUCAGGGUUCUCGGCACUCGCUGCCGCAUACCUCACCUUGAUAUGACAACCAACAUGCUGUGGUUCU- -.(((((.....)))))((((((((...(((((.....)))))........)))))))).....(((((........)))))..- ( -24.20, z-score = -1.89, R) >droSim1.chrU 5263221 84 - 15797150 GCGAGGCUACUUUUCGCUCUACUACU-ACGGCUCUCGUAGCCGCACAGCUCACCUAAUCAAUAUGAUAAGCAUUCCUAGGGUUCU ((..((((((.....(((.((....)-).)))....)))))).....))...((((......(((.....)))...))))..... ( -15.00, z-score = 0.64, R) >droSec1.super_86 55327 66 + 128402 GCGAGGCUACUUCUCGCUCUACUACU-ACGGCUCUCGUAGCCGCACAGCUCACUUAAUCAAUAUGCU------------------ ((((((.....)))))).........-.(((((.....)))))...(((...............)))------------------ ( -14.46, z-score = -1.27, R) >consensus GCGAGGCUACUUCUCGCUCUACUACU_ACGGCUCUCGUAGCCGCACAGCUCACCUAAUCAAUAUGAU_A_CAU_C___GG_U___ ((((((.....))))))...........(((((.....))))).......................................... ( -8.54 = -9.10 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:05 2011