| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 73,352 – 73,449 |
| Length | 97 |
| Max. P | 0.671157 |
| Location | 73,352 – 73,449 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 54.02 |
| Shannon entropy | 0.74438 |
| G+C content | 0.55712 |
| Mean single sequence MFE | -36.77 |
| Consensus MFE | -12.50 |
| Energy contribution | -13.62 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 73352 97 + 2555491 --CGCACC---ACGAAGUUGUUGAUUGAUGGCUGCAAGGCGCUCUUUGUAGCG--CUGCCGGUCUUCCUCA-UUAGUUGCCGUCUUCAGUAGUUCGAUGUUGAGC --..((.(---(((((.(((((((..((((((.((..((((((......))))--))...((....))...-...)).)))))).))))))))))).)).))... ( -29.30, z-score = -0.39, R) >dp4.Unknown_group_65 23483 104 - 26850 GGCGCGCUG-GGCGGGGCCGGUGCUGGUCAUUGCACAGUCCUUAUAUUGGGCGAUCUGUGCAGCGCUGUCAGUUUUUUCAGGGUUUUGGCACGUUCCAAAGCAGC (((((((((-.(((((..(.((((........)))).((((.......))))).))))).)))))).)))............(((((((......)))))))... ( -40.40, z-score = -1.12, R) >droPer1.super_86 57637 104 - 225837 GGCGCGCUG-GGCGGGGCCGGUGCUGGUCAUUGCACAGUCCUUAUAUUGGGCGCUCUGUGCAGCGCUGUCAGUUUUUUCAGGGUUUUGGCACGUUCCAAAGCAGC (((((((((-.(((((((..((((........)))).((((.......))))))))))).)))))).)))............(((((((......)))))))... ( -46.40, z-score = -2.60, R) >droWil1.scaffold_181148 1140967 100 - 5435427 --CGCUCUUUGGCGAAGUUGAACUGUAUUGUUCAUGAGGCACUCUGUGUAGUG--CUGUCGGUCCUUGUCA-UCCAGUCCUGUGUGAAGGAGGUCCUGGAGAAGC --.((((((((((.....(((((......)))))...((((((......))))--)))))((.((((.(((-..((....))..)))..)))).)).)))).))) ( -31.00, z-score = -0.90, R) >consensus __CGCGCUG_GGCGAAGCCGGUGCUGGUCAUUGCACAGGCCCUAUAUGGAGCG__CUGUCCAGCGCUGUCA_UUUUUUCAGGGUUUUAGCACGUCCCAAAGCAGC ...((.....((((((((((....)))))(((((((((..(((......)))...))))))))).)))))............(((((((......))))))).)) (-12.50 = -13.62 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:03 2011