| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 44,782 – 44,857 |
| Length | 75 |
| Max. P | 0.984226 |
| Location | 44,782 – 44,857 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 68.34 |
| Shannon entropy | 0.61477 |
| G+C content | 0.38709 |
| Mean single sequence MFE | -10.45 |
| Consensus MFE | -6.01 |
| Energy contribution | -6.27 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.984226 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 44782 75 + 2555491 GUCCCAAGACUUCUAGAUCUGAGGACAACCCUCUUAUUUUCCCAAACAUAGAAGAAGAC-CUUCUCUAAAUCCUCU ((((..(((........)))..))))......................((((.(((...-.)))))))........ ( -11.30, z-score = -0.25, R) >droAna3.scaffold_13250 660170 70 - 3535662 -GUUGAAAAUUUUCAGACACAAG-----CCUCGGAAGAAACACAACAGCAAUAAAAAUAAAAAUUGAUAAUAGACC -((((....(((((.((......-----..)).)))))....)))).............................. ( -5.70, z-score = -0.87, R) >droEre2.scaffold_4929 22676371 75 + 26641161 GUCCCAAAUCUUCUGAAUCUGAGGAAAACCCUCUUAUUACCCCUUACAUAGAAGAAGCC-CUUCUAGUAACAUCCU ...............(((..((((.....))))..))).....((((.((((((.....-))))))))))...... ( -12.90, z-score = -2.12, R) >droYak2.chrU 10295443 76 - 28119190 AUACCAAGUCUUCUAAAUCCGAGGAAAACCCUCUUAUUAUCCCUUAUAUAGAAGAAGCCGCUUCUAGUAACAUCCU .(((................((((.....))))...............((((((......)))))))))....... ( -11.00, z-score = -1.32, R) >droSec1.super_532 3008 75 - 9389 GUCCCAAAACUUCUACAUCUGAGGAAAACCCUCUUAUUACCCCAUACAUAGAAGAAGCC-CUUCUAGUAACAUCCU ....................((((.....))))...........(((.((((((.....-)))))))))....... ( -12.00, z-score = -2.59, R) >droSim1.chrU 4928020 75 + 15797150 GUCCCAAGACUUCUAAAUCUGAGGAAAACCCUCUUAAUAACCCAUACAUAGAAAAAGCC-CUUCUAGUAACAUCCU (((....)))..........((((.....))))...........(((.(((((......-.))))))))....... ( -9.80, z-score = -1.79, R) >consensus GUCCCAAAACUUCUAAAUCUGAGGAAAACCCUCUUAUUAACCCAUACAUAGAAGAAGCC_CUUCUAGUAACAUCCU ....................((((.....))))...............((((((......)))))).......... ( -6.01 = -6.27 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:02 2011