| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 25,939 – 26,021 |
| Length | 82 |
| Max. P | 0.903611 |
| Location | 25,939 – 26,021 |
|---|---|
| Length | 82 |
| Sequences | 4 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 57.68 |
| Shannon entropy | 0.70405 |
| G+C content | 0.39042 |
| Mean single sequence MFE | -13.00 |
| Consensus MFE | -5.32 |
| Energy contribution | -5.83 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.903611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 25939 82 - 2555491 AAAAUAUAACUCCGGCAAACU-CCGUCCAUUUACUUAAU-UCACGCUAUCUGAGUCUCUAAGCCAGAAGCUAUUGUAAAUCAUC ....(((((...(((......-)))..............-....(((.((((.((......)))))))))..)))))....... ( -10.10, z-score = -1.05, R) >droSim1.chr2R_random 310904 82 - 2996586 AAAUCGAAACUCCAGCGAUUCGCCGU-UAUCUUCUUAUUAUCACGCUAUCUGAGUCUCUAGACCAGAAGCCUUCGUAAU-CAUC ....((((.....((((......)))-)................(((.((((.(((....)))))))))).))))....-.... ( -14.80, z-score = -1.35, R) >droSec1.super_1485 4619 83 - 5433 AAAUCGAAACUCCGGCAACUCGCCGUAUAUAUUCUUAUUAUCACGCUAUCUGAGUCUCUAGGCCAGAAGCCUUUGUACA-CAAC ....((((....((((.....))))...................(((.((((.(((....)))))))))).))))....-.... ( -15.90, z-score = -1.53, R) >droMoj3.scaffold_6500 30048031 65 - 32352404 ----------------AAUUUUUAAGGCUAAGAAUCACUGUUUU-UUUUUUGCGACUAUCGACCAAAAUCGAUGGUAC--UAUC ----------------..........((.(((((..........-))))).)).((((((((......))))))))..--.... ( -11.20, z-score = -1.54, R) >consensus AAAUCGAAACUCCGGCAAUUCGCCGU_CAUAUACUUAUUAUCACGCUAUCUGAGUCUCUAGACCAGAAGCCAUUGUAAA_CAUC ............................................(((.((((.(((....)))))))))).............. ( -5.32 = -5.83 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:01 2011