| Sequence ID | dm3.chr3LHet |
|---|---|
| Location | 12,115 – 12,227 |
| Length | 112 |
| Max. P | 0.821991 |
| Location | 12,115 – 12,227 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 74.30 |
| Shannon entropy | 0.41057 |
| G+C content | 0.41821 |
| Mean single sequence MFE | -32.67 |
| Consensus MFE | -21.83 |
| Energy contribution | -26.07 |
| Covariance contribution | 4.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821991 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3LHet 12115 112 - 2555491 GCUCCUGCAUAGCAGAGAGAAUAUGUAGCGAGAUGAUGAGUCGCUCAUGUGCAGCUAAGCUUUAUUCUA---UUUGUAGCUUUGUGGUAUGUGGCCUCGCAUGUGUACCAAUUAU .(((((((...)))).))).((((((.(((((..((....))((.(((((((.((.(((((.((.....---..)).))))).)).))))))))))))))))))))......... ( -32.50, z-score = -0.47, R) >droSim1.chr3h_random 624060 110 + 1452968 --UCCUGCAUAGCAGAGAGUAUAUACAGAGAGAGGAUGAGUCGCUCAUUUGCAGCUAAGCUACAUUCUA---UUUGUUGCUUUGUGGUAUGUGGCCUCGCAUGUGUACGUAUGAU --..(..((((.((.((((((...(((((...(((((((((.((((....).)))...))).)))))).---))))))))))).)).))))..)..(((.(((....))).))). ( -30.30, z-score = 0.14, R) >droSec1.super_54 131553 107 - 216317 ---CUUGCAUAGCAGAGAGUA-GGAUAGGGAGAAGAUGAAAUGCUCAU-UGCAGCUUAUUUUCA--CUGUC-UUUGUAGCUUUGUGGUACGUGGCUUUGUAUGUGUACCUAUGAU ---....((((((((((...(-((((((...((((((((..(((....-.)))..)))))))).--)))))-)).....))))))(((((..(........)..))))))))).. ( -31.80, z-score = -1.57, R) >droYak2.chrU 10270992 98 - 28119190 ACUCCUGCAUAGCAGAGAGUA-GGAUAGAGAGAAGAUGAAUUGCUUAU-UGUAGCUUAUCUUCAUUCUGUCUUUUGUAGCUUUGUGGUAUGUGGCUUUGU--------------- ....(..((((.((.((((((-((((((((.((((((((.((((....-.)))).)))))))).))))))))).....))))).)).))))..)......--------------- ( -36.10, z-score = -4.02, R) >consensus __UCCUGCAUAGCAGAGAGUA_AGAUAGAGAGAAGAUGAAUCGCUCAU_UGCAGCUAAGCUUCAUUCUA___UUUGUAGCUUUGUGGUAUGUGGCCUCGCAUGUGUACCUAUGAU ....(..((((.((.(((((...(((((((.(((((((((((((......))))))))))))).))))))).......))))).)).))))..)..................... (-21.83 = -26.07 + 4.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:50:00 2011