Locus 5518

Sequence ID dm3.chr2R
Location 21,067,238 – 21,067,342
Length 104
Max. P 0.962534
window7575

overview

Window 5

Location 21,067,238 – 21,067,342
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.18
Shannon entropy 0.34408
G+C content 0.50820
Mean single sequence MFE -35.20
Consensus MFE -25.05
Energy contribution -25.50
Covariance contribution 0.45
Combinations/Pair 1.21
Mean z-score -2.18
Structure conservation index 0.71
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.71
SVM RNA-class probability 0.962534
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 21067238 104 - 21146708
AUGUGUGCGACCGUCCAGAGAAGUUAAGGAUGUCAGCAGUUGGGGCUAGGGUUUUGUAGUCCGCAUACCAGACCAUGUGCUAAGUGGCAUGUGGUCAAAUUGAU
..(((((((((.((((...........)))))))........((((((.(....).))))))))))))..(((((((((((....)))))))))))........ ( -38.60, z-score =  -3.20, R)
>droAna3.scaffold_13266 12359453 93 - 19884421
ACAUGUGCAGCGACCCA---------AGGAUGCGAG--AUGGGCGUUGGAGUAGUCGGGUCCGAAGGCGAAACCAUGUGCUAAGCGGCAUGUGGUCAAGCGGCC
......((.(.(((((.---------..(((((...--....))))).((....))))))))....((...((((((((((....))))))))))...)).)). ( -29.70, z-score =   0.38, R)
>droEre2.scaffold_4845 22469444 103 - 22589142
AUGUGUGCGACCGUCCAAAGAAGUUGGGGAUGUGAGUGGUUGGGGAUGGGAUUUUGUAGUCCGCAUACC-AACCAUGUGCUAAGUGGCAUGUGGUCGAAUUGAU
.......(((((((((((.....))))).......((((((((..((((((((....))))).))).))-))))))(((((....))))).))))))....... ( -35.80, z-score =  -2.44, R)
>droYak2.chr2R 21021096 104 - 21139217
AUGUGUGCGACCGUCCAAAGAAGUUUGGGAUGUGAGUGGUUGGGGUUGGGAUUUUGUAGUCCGCAUACCAAACCAUGUGCUAAGUGGCAUGUGGUCGAAUUGAU
.......((((((((((((....))))))......((((((.((..(((((((....))))).))..)).))))))(((((....))))).))))))....... ( -32.70, z-score =  -1.58, R)
>droSec1.super_23 907035 104 - 989336
AUGUGUGCGACCGUCCAGAGAAGUUAAGGAUGUGAGCAGUUGGGGCUAGGAUUUUGUAGUCCGCAUACCAGACCAUGUGCUAAGUGGCAUGUGGUCGAAUUGAU
..((((((..((((((...........))))).)........((((((.(....).))))))))))))..(((((((((((....)))))))))))........ ( -37.20, z-score =  -3.11, R)
>droSim1.chr2R 19503281 104 - 19596830
AUGUGUGCGACCGUCCAGAGAAGUUAAGGAUGUGAGCAGUUGGGGCUAGGAUUUUGUAGUCCGCAUACCAGACCAUGUGCUAAGUGGCAUGUGGUCGAAUUGAU
..((((((..((((((...........))))).)........((((((.(....).))))))))))))..(((((((((((....)))))))))))........ ( -37.20, z-score =  -3.11, R)
>consensus
AUGUGUGCGACCGUCCAGAGAAGUUAAGGAUGUGAGCAGUUGGGGCUAGGAUUUUGUAGUCCGCAUACCAAACCAUGUGCUAAGUGGCAUGUGGUCGAAUUGAU
..((((((...(((((...........)))))..........((((((.(....).))))))))))))...((((((((((....))))))))))......... (-25.05 = -25.50 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:58 2011