| Sequence ID | dm3.chr2R |
|---|---|
| Location | 21,029,655 – 21,029,720 |
| Length | 65 |
| Max. P | 0.994993 |
| Location | 21,029,655 – 21,029,720 |
|---|---|
| Length | 65 |
| Sequences | 4 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 53.87 |
| Shannon entropy | 0.77357 |
| G+C content | 0.47333 |
| Mean single sequence MFE | -14.72 |
| Consensus MFE | -9.19 |
| Energy contribution | -8.12 |
| Covariance contribution | -1.06 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.75 |
| SVM RNA-class probability | 0.994993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 21029655 65 + 21146708 UUUGGUCAAUCGAGCCUUUAAUCGACUCUGCAGUUUCCCCCUACCAAAGGUAAGGAACUCAGAGA .........((((........))))(((((.((((((..(((.....)))...))))))))))). ( -17.90, z-score = -1.92, R) >droPer1.super_164 85937 53 + 94152 --------GUUGGUCCUUCGAGACUCUCCGUUGUUUCCCC---CCUGUGGUAAGAG-CACGGAGU --------...((((......))))((((((.((((...(---(....))...)))-))))))). ( -13.70, z-score = -0.42, R) >droAna3.scaffold_13089 423646 55 - 978470 UUUGGUCCAUCGAGAC--------ACCCUGACGUUUUCCCC--CCUGUGGUAAGAGACUCAGGUU ....(((......)))--------..(((((.(((((...(--(....))...)))))))))).. ( -12.20, z-score = 0.22, R) >droSec1.super_43 56432 65 + 327307 UUUGGUUGUUUUGUUUUUCGAAAUUCUCUGCAGUUUUUUCGCACCAGUAGUAAAAAACUCAGAGA .......((((((.....))))))((((((.((((((((.((.......)))))))))))))))) ( -15.10, z-score = -2.19, R) >consensus UUUGGUC_AUCGAGCCUUCGA_A_ACUCUGCAGUUUCCCCC__CCAGUGGUAAGAAACUCAGAGA .........................(((((.((((((.((........))...))))))))))). ( -9.19 = -8.12 + -1.06)
| Location | 21,029,655 – 21,029,720 |
|---|---|
| Length | 65 |
| Sequences | 4 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 53.87 |
| Shannon entropy | 0.77357 |
| G+C content | 0.47333 |
| Mean single sequence MFE | -15.72 |
| Consensus MFE | -10.52 |
| Energy contribution | -10.78 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.73 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.71 |
| SVM RNA-class probability | 0.994548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 21029655 65 - 21146708 UCUCUGAGUUCCUUACCUUUGGUAGGGGGAAACUGCAGAGUCGAUUAAAGGCUCGAUUGACCAAA ..(((((((((((((((...))))))))...))).))))(((((((........))))))).... ( -19.70, z-score = -1.28, R) >droPer1.super_164 85937 53 - 94152 ACUCCGUG-CUCUUACCACAGG---GGGGAAACAACGGAGAGUCUCGAAGGACCAAC-------- .((((((.-(((((.....)))---))(....).)))))).((((....))))....-------- ( -16.20, z-score = -0.90, R) >droAna3.scaffold_13089 423646 55 + 978470 AACCUGAGUCUCUUACCACAGG--GGGGAAAACGUCAGGGU--------GUCUCGAUGGACCAAA ..(((((((.(((..((...))--..)))..)).)))))(.--------((((....)))))... ( -13.70, z-score = 0.78, R) >droSec1.super_43 56432 65 - 327307 UCUCUGAGUUUUUUACUACUGGUGCGAAAAAACUGCAGAGAAUUUCGAAAAACAAAACAACCAAA ((((((((((((((..((....))..)))))))).))))))........................ ( -13.30, z-score = -2.39, R) >consensus ACUCUGAGUCUCUUACCACAGG__GGGGAAAACUGCAGAGA_U_UCGAAGGACCAAU_GACCAAA .((((((.(((((((((...))))))))).....))))))......................... (-10.52 = -10.78 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:56 2011