| Sequence ID | dm3.chr2R |
|---|---|
| Location | 21,014,304 – 21,014,409 |
| Length | 105 |
| Max. P | 0.601573 |
| Location | 21,014,304 – 21,014,409 |
|---|---|
| Length | 105 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 74.47 |
| Shannon entropy | 0.54691 |
| G+C content | 0.41276 |
| Mean single sequence MFE | -23.54 |
| Consensus MFE | -10.93 |
| Energy contribution | -11.09 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.601573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 21014304 105 - 21146708 UGAUAUUUGAUUUAAU-GACGACUUGCUUCCGAAACAAUCCAAUCAAAAAAUUUGAUUAAAGUGGGCGUCGCAGCAGCAAAAC-AGGAAAGUAACUUAUGCUACCUG----------- .....((((......(-((((.((..(((..((.....)).((((((.....)))))).)))..)))))))......)))).(-(((..((((.....)))).))))----------- ( -20.40, z-score = -0.94, R) >droSim1.chr2R 19466749 105 - 19596830 UGAUAUUUGAUUUAAU-GACGACUUGCUUCCGAAACAAUCCAAUCAAAAAAUUUGAUUGAAGUGGGCGUCGCAGCAGCAAAAC-AGGAAAGUAACUUCUGCUGCCUA----------- ................-((((.((..((((.((.....)).((((((.....))))))))))..))))))(((((((....((-......)).....)))))))...----------- ( -27.70, z-score = -2.40, R) >droSec1.super_23 871144 105 - 989336 UGAUAUUUGAUUUAAU-GACGACUUGCUUCCGAAACAAUCCAAUCAAAAAAUUUGAUUGAAGUGGGCGUCGCAGCAGCAAAAC-AGGAAAGUAACUUCUGCUGCCUA----------- ................-((((.((..((((.((.....)).((((((.....))))))))))..))))))(((((((....((-......)).....)))))))...----------- ( -27.70, z-score = -2.40, R) >droYak2.chr2R 20984962 105 - 21139217 UGAUAUUCUAUUUAAU-GACGACUUGCUUCCGAAACAAUCCAAUCAAAAAAUUUGAUUGAAGUGGGCGUCGCGGCAGCAAAAC-AGGAAAGUAACUUCUGCUGCCUG----------- ................-((((.((..((((.((.....)).((((((.....))))))))))..))))))..(((((((....-((........))..)))))))..----------- ( -29.10, z-score = -2.85, R) >droEre2.scaffold_4845 22432479 105 - 22589142 UGAUAUUUGAUUUAAU-GACGACUUGCUUCCGAAAGAAUCCAAUCAAAAAAUUUGAUUGAAGUGGGCGUCGCACCAGCAAAAC-AGGAAAGUAACUUCUGCUGCCUG----------- .....((((......(-((((.((..(((((....).....((((((.....))))))))))..)))))))......)))).(-(((..((((.....)))).))))----------- ( -27.40, z-score = -2.53, R) >droAna3.scaffold_13266 12321613 106 - 19884421 UGAUAUUUGAUUUAAU-GACGACUUGCUCCCGAAACAAUCCAAUCAAAAAAUUUGAUUGAAGUGGGCGUAGUCGCUGCGAAGCUUCCAGAGUAACUUCUGUUGUCUG----------- ................-(((((((.((.((((...(((((.(((......))).)))))...)))).))))))(((....)))...(((((....)))))..)))..----------- ( -25.10, z-score = -1.49, R) >dp4.chr3 10123710 102 - 19779522 UGAUAUUUGAUUUAAU-GACGACUUGCUUCCGAAACAAUCCAAUCAAAAAAUUUGAUUGAAGUGGGCGUCGUCCGCCCAGCGAAACUGCUGCCUGCCGCUGCC--------------- ..............((-((((.((..((((.((.....)).((((((.....))))))))))..)))))))).....(((((.....((.....)))))))..--------------- ( -24.20, z-score = -1.40, R) >droPer1.super_4 5453120 102 - 7162766 UGAUAUUUGAUUUAAU-GACGACUUGCUUCCGAAACAAUCCAAUCAAAAAAUUUGAUUGAAGUGGGCGUCGUCCGCCCAGCGAAACUGCUGCCUGCCGCUGCC--------------- ..............((-((((.((..((((.((.....)).((((((.....))))))))))..)))))))).....(((((.....((.....)))))))..--------------- ( -24.20, z-score = -1.40, R) >droWil1.scaffold_180700 5286673 93 + 6630534 UGAUAUUUGAUUUAAUGGACGACUUGCUUCCGAAACAAUCCAAUCAAAAAAUUUGAUUGAAGUGGGCGUCCUCUGGUCAUCUAGAGAGCUGCU------------------------- ................(((((.((..((((.((.....)).((((((.....))))))))))..)))))))(((((....)))))........------------------------- ( -23.40, z-score = -1.63, R) >droVir3.scaffold_12875 18340890 88 + 20611582 UGAUAUUUGAUUUAAU-GACGACUUGCUUCCGAAACAAUCCAAUCAAAAAAUUUGAUUGAAGUGGGCGGCGCAGAGGCCCCAGCGGCGG----------------------------- ................-......((((..(((...((...(((((((.....)))))))...))..))).))))..(((.....)))..----------------------------- ( -18.30, z-score = 0.73, R) >droMoj3.scaffold_6496 22981344 83 - 26866924 UGAUAUUUGAUUUAAU-GACGACUUGCUUCCGAAACAAUCCAAUCAAAAAAUUUGAUUGAAGUGGGCGGUGGAGUCCGUGGCGG---------------------------------- ................-............(((..((....(((((((.....)))))))....((((......))))))..)))---------------------------------- ( -17.10, z-score = 0.20, R) >droGri2.scaffold_15112 781862 117 + 5172618 UGAUAUUUGAUUUAAU-GACGACUUGCUUCCGAAACAAUCCAAUCAAAAAAUUUGAUUGAAGUGGGCGGCAUACUCCAAAAAGAAAAUAAAAAAGCUUACUCAGUCAAUCCCUGCAGG ................-.....(((((....((.....))............((((((((.((((((...........................)))))))))))))).....))))) ( -17.83, z-score = 0.32, R) >consensus UGAUAUUUGAUUUAAU_GACGACUUGCUUCCGAAACAAUCCAAUCAAAAAAUUUGAUUGAAGUGGGCGUCGCAGCAGCAAAAC_AGGAAAGUAACUUCUGCUG_CU____________ ...................((.((..((((.((.....)).((((((.....))))))))))..)))).................................................. (-10.93 = -11.09 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:55 2011