| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,915,246 – 3,915,296 |
| Length | 50 |
| Max. P | 0.647813 |
| Location | 3,915,246 – 3,915,296 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 97.00 |
| Shannon entropy | 0.04868 |
| G+C content | 0.57000 |
| Mean single sequence MFE | -13.45 |
| Consensus MFE | -13.06 |
| Energy contribution | -12.88 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3915246 50 + 23011544 GCCCGCGACCGGUCGCAACCCCCACAAUUAAAAUGCAUUCCUGAGGGCAA ((((((((....))))...................((....)).)))).. ( -13.20, z-score = -1.18, R) >droSim1.chr2L 3870447 50 + 22036055 GCCCGCGACCGGUCGCAACCCCCACAAUUAAAAUGCAUUCCUGAGGGCAA ((((((((....))))...................((....)).)))).. ( -13.20, z-score = -1.18, R) >droSec1.super_5 2018325 50 + 5866729 GCCCGCGACCGGUCGCAACCCCCACAAUUAAAAUGCAUUCCUGAGGGCAA ((((((((....))))...................((....)).)))).. ( -13.20, z-score = -1.18, R) >droEre2.scaffold_4929 3967825 50 + 26641161 GCCCGCGACCGGUUGCAACCCGCACAAUUAAAAUGCAUUCUUGAGGGCAA ((((((((....)))).....(((.........)))........)))).. ( -14.20, z-score = -1.03, R) >consensus GCCCGCGACCGGUCGCAACCCCCACAAUUAAAAUGCAUUCCUGAGGGCAA ((((((((....))))...................((....)).)))).. (-13.06 = -12.88 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:55 2011