| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,970,606 – 20,970,697 |
| Length | 91 |
| Max. P | 0.826007 |
| Location | 20,970,606 – 20,970,697 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 77.85 |
| Shannon entropy | 0.30294 |
| G+C content | 0.36680 |
| Mean single sequence MFE | -17.67 |
| Consensus MFE | -15.10 |
| Energy contribution | -14.43 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20970606 91 + 21146708 UUCCCAUCGGUAUCCCUGCGGAUAUAUGUACAUACAAGCGAUGUCCAGAAAGUUUUUUGAUAGAAAUGCAAUAACCGGAGACAAUAACAAU------ ......(((((.....(((((((((.(((........))))))))).....((((((....)))))))))...))))).............------ ( -16.20, z-score = -0.62, R) >droSim1.chr2R 19424045 95 + 19596830 UUCCCAGCUGUAUCCGUCCGGAUAUACAUAUGUAUGUACAAG--CGAUAAAGUUUUUUGCUGGAAAUACAAAAACCGGAGACAAAAAAACAAACAAU ((((..(.(((((((....))))))))...(((((.....((--(((.........)))))....)))))......))))................. ( -18.40, z-score = -1.73, R) >droSec1.super_23 828705 95 + 989336 UUCCCAGCUGUAUCCGUCCGGAUAUACAUAUGUAUGUACAAG--CGAUAAAGUUUUUUGCUGGAAAUACAAAAACCGGAGACAAAAAAACAAACAAU ((((..(.(((((((....))))))))...(((((.....((--(((.........)))))....)))))......))))................. ( -18.40, z-score = -1.73, R) >consensus UUCCCAGCUGUAUCCGUCCGGAUAUACAUAUGUAUGUACAAG__CGAUAAAGUUUUUUGCUGGAAAUACAAAAACCGGAGACAAAAAAACAAACAAU ...(((((.((((((....))))))((((....)))).....................))))).............(....)............... (-15.10 = -14.43 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:45 2011