| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,954,107 – 20,954,206 |
| Length | 99 |
| Max. P | 0.968928 |
| Location | 20,954,107 – 20,954,206 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 81.80 |
| Shannon entropy | 0.38141 |
| G+C content | 0.39321 |
| Mean single sequence MFE | -24.21 |
| Consensus MFE | -16.49 |
| Energy contribution | -16.01 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.968928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20954107 99 + 21146708 CAAGCGUUGAUAAAACAUUAAAACCAAUCUGAUAAGAAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUGUCUGUGUGGAUUCUGAG-CGCC-------------- ...(((((.....))).........((((((...(((.((((((((((((.((((....))))..)))))))))))).)))...))))))....)-)...-------------- ( -25.70, z-score = -2.60, R) >droSim1.chr2R 19406789 99 + 19596830 CAAGCGUUGAUAAAACAUUAAAACCAAUCUGAUAAGAAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUGUCUGUGUGGAUUCUGAG-CGCC-------------- ...(((((.....))).........((((((...(((.((((((((((((.((((....))))..)))))))))))).)))...))))))....)-)...-------------- ( -25.70, z-score = -2.60, R) >droSec1.super_23 811890 99 + 989336 CAAGCGUUGAUAAAACAUUAAAACCAAUCUGAUAAGAAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUGUCUGUGUGGAUUCUGAG-CGCC-------------- ...(((((.....))).........((((((...(((.((((((((((((.((((....))))..)))))))))))).)))...))))))....)-)...-------------- ( -25.70, z-score = -2.60, R) >droYak2.chr2R 20922413 99 + 21139217 CAAGCGUUGAUAAAACAUUAAAACCAAUCUGAUAAGAAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUGUCUGUGUGGAUUCUGCG-CGCC-------------- ...((((.((................(((((...(((.((((((((((((.((((....))))..)))))))))))).)))...))))))).)))-)...-------------- ( -26.49, z-score = -2.48, R) >droEre2.scaffold_4845 22334120 99 + 22589142 CAAGCGUUGAUAAAACAUUAAAACCAAUCUGAUAAGAAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUGUCUGUGUGGAUUCUGCG-CGCC-------------- ...((((.((................(((((...(((.((((((((((((.((((....))))..)))))))))))).)))...))))))).)))-)...-------------- ( -26.49, z-score = -2.48, R) >droAna3.scaffold_13266 12257323 93 + 19884421 CGAGCGUUGAUAAAACAUCAAAACCAAUCUGAUAAGGAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUAUCUCU-UGGUUUCUGA-------------------- .....(((.....))).(((((((((((((.....)))((((((((((((.((((....))))..)))))))))))).....)-)))))).)))-------------------- ( -23.50, z-score = -2.59, R) >dp4.chr3 10066466 101 + 19779522 CGAGCGUUGAUAAAACAUCAAAACCAAUCUGAUAAGGAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUAUCUCUUUCUGCUUUGUUUCGGCA------------- .((((.(((((.....))))).........((.(((((((((((((((((.((((....))))..)))))))))))).)).))))).))))..........------------- ( -22.70, z-score = -1.42, R) >droPer1.super_4 5384777 101 + 7162766 CGAGCGUUGAUAAAACAUCAAAACCAAUCUGAUAAGGAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUAUCUCUUUCUGCUUUGUUUCGGCA------------- .((((.(((((.....))))).........((.(((((((((((((((((.((((....))))..)))))))))))).)).))))).))))..........------------- ( -22.70, z-score = -1.42, R) >droWil1.scaffold_180700 5178337 99 - 6630534 UCGGCGUUGAUAAAACAUCAAAACCAAUCUGAUAAGGAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUAACAAUUC-UGAAAGUGAGUGAG-------------- ..((..(((((.....)))))..))..((.((...(..((((((((((((.((((....))))..))))))))))))..)...))-.))...........-------------- ( -23.30, z-score = -2.28, R) >droVir3.scaffold_12875 18225343 97 - 20611582 CGAGCGUUGAUAAAGCAUCAAGACCAAUCUGAUAAGGAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUUACGAUUCGCGUUGGCCGUG----------------- ...((((((((.....)))))..(((((.(((...(.(((((((((((((.((((....))))..))))))))))))).)...))).))))).))).----------------- ( -27.50, z-score = -1.86, R) >droGri2.scaffold_15112 661982 113 - 5172618 -GAGCGUUGAUAACACAUCAAGACCAAUCUGAUAAGGAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUUACAAUUUGCGAAAGAGAGACAGCAAUAAUAGCCAGG -(.((((((.......((((.((....))))))....(((((((((((((.((((....))))..))))))))))))).))))((((............)))).....)))... ( -22.70, z-score = -1.60, R) >droMoj3.scaffold_6496 22854887 85 + 26866924 -GAGCGUUGAUAAAGCAUCAAAACCAAUCUGAUAAGGAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUUACAAUUUG---------------------------- -(.(..(((((.....)))))..))..........(.(((((((((((((.((((....))))..))))))))))))).)......---------------------------- ( -18.00, z-score = -1.91, R) >consensus CGAGCGUUGAUAAAACAUCAAAACCAAUCUGAUAAGGAACGCUUUAAAUUCCGUUACGUAACGCAAAUUUAGAGCGUGUCUGUUUGGAUUCUGAG_CGCC______________ ......(((((.....)))))......(((....))).((((((((((((.((((....))))..))))))))))))..................................... (-16.49 = -16.01 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:43 2011