| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,948,716 – 20,948,780 |
| Length | 64 |
| Max. P | 0.720726 |
| Location | 20,948,716 – 20,948,780 |
|---|---|
| Length | 64 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 73.93 |
| Shannon entropy | 0.50105 |
| G+C content | 0.32452 |
| Mean single sequence MFE | -11.08 |
| Consensus MFE | -6.05 |
| Energy contribution | -6.88 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720726 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20948716 64 - 21146708 AGGAUUUUACUUUUCAAACAAGUGAACGCGAUUGAUUAAAUAGUUGCUUUCAAUUGGAAUUUGA .............((((((((.((((.(((((((......))))))).)))).)))...))))) ( -11.40, z-score = -1.19, R) >droEre2.scaffold_4845 22328663 59 - 22589142 AGGAUUUUACUUUUCAAACAAGUGAGAGCAAUUG-----AUAGUUGCCUUCAAUUGGAACUACA .(((........)))...(((.((((.(((((..-----...))))).)))).)))........ ( -10.10, z-score = -0.65, R) >droYak2.chr2R 20916774 63 - 21139217 AGGAUUUAACUAUUCAAACAAGUGAGAGCAAUCGAUUAAAUAGUUGCCUUCCA-UGGAAUUCCA .(((..((((((((((......)))((....))......)))))))...))).-(((....))) ( -11.40, z-score = -1.19, R) >droSec1.super_23 806390 64 - 989336 AGGAUUUCACUUUUCAAACAAGUGAACGCGAUUGAUUAUAUAGUUGCUUUCAAUUGGAAUUCCA .(((.(((((((.......))))(((.(((((((......))))))).))).....))).))). ( -14.10, z-score = -2.20, R) >droSim1.chr2R 19401342 64 - 19596830 AGGAUUUCACUUUUCAAACAAGUGAACGCGAUUGAUUAUAUAGUUGUUUUCAAUUGGAAUUCCA .(((.(((((((.......)))))))..(((((((..(((....)))..)))))))....))). ( -16.10, z-score = -3.03, R) >droAna3.scaffold_13266 12251836 56 - 19884421 AGGAUUUUCCUCUUUUUCCU--UGCAUAUCAUU------AAAGUUACUCUAAGUACAACUUGCA ((((............))))--((((.......------..((((((.....)))..))))))) ( -3.40, z-score = 0.53, R) >consensus AGGAUUUUACUUUUCAAACAAGUGAACGCGAUUGAUUA_AUAGUUGCUUUCAAUUGGAAUUCCA ..................(((.((((.(((((((......))))))).)))).)))........ ( -6.05 = -6.88 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:42 2011