| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,935,293 – 20,935,391 |
| Length | 98 |
| Max. P | 0.992591 |
| Location | 20,935,293 – 20,935,391 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.20 |
| Shannon entropy | 0.45818 |
| G+C content | 0.41365 |
| Mean single sequence MFE | -26.18 |
| Consensus MFE | -13.02 |
| Energy contribution | -13.30 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.55 |
| SVM RNA-class probability | 0.992591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20935293 98 + 21146708 ---GAUCGUUAUCGUAUGG-----UCAGCCAG--AUCCAUUGUAGUCUUUUCUUUCCCACUCCCAUCGGCUUUU--AUUUAAGUUA-AAGUCGCUAGUGCUAAGACGAUCA ---(((((((((...((((-----((.....)--).)))).)))).....((((...((((.....(((((((.--((....)).)-))))))..))))..))))))))). ( -20.10, z-score = -1.77, R) >droSim1.chr2R 19388027 98 + 19596830 ---GAUCGUUAUCGUAUGG-----UCAGCCAG--AUCCAUUGUAGUCUUUUCUUUCCCACUCCGAGCGGCUUUU--AUUUAAGUUU-AAGUCGCUAGUGCUAAGACGAUCA ---(((((((((...((((-----((.....)--).)))).)))).....((((...((((...((((((((..--((....))..-))))))))))))..))))))))). ( -25.60, z-score = -2.66, R) >droSec1.super_23 793135 98 + 989336 ---GAUCGUUAUCGUAUGG-----UCAGCCAG--AUCCAUUGUAGUCUUUUCUUUCCCACUCCGAGCGGCUUUU--AUUUAAGUUU-AAGUCGCUAGUGCUAAGACGAUCA ---(((((((((...((((-----((.....)--).)))).)))).....((((...((((...((((((((..--((....))..-))))))))))))..))))))))). ( -25.60, z-score = -2.66, R) >droYak2.chr2R 20902769 98 + 21139217 ---GAUCGUUAUCGUAUGG-----CCAGCCAG--AUCCAUUGUAGUCUUUUCUUUCCCACUCCGAGCGGCUUUU--AUUUAAGUUU-AAGUCGCUAGUUCUAAGACGAUCA ---(((((((.(((..(((-----..((..((--((........))))...))...)))...)))(((((((..--((....))..-))))))).........))))))). ( -23.30, z-score = -2.25, R) >droEre2.scaffold_4845 22314960 98 + 22589142 ---GAUCGUUAUCGUAUGG-----CCAGCCAG--AUCCAUUGUAGUCUUUUCUUUCCCACUCCGAGCGGCUUUU--AUUUAAGUUU-AAGUCGCUAGUUCUAAGACGAUCA ---(((((((.(((..(((-----..((..((--((........))))...))...)))...)))(((((((..--((....))..-))))))).........))))))). ( -23.30, z-score = -2.25, R) >droAna3.scaffold_13266 12238095 96 + 19884421 ---GAUCGUUAUCGUAUAU------GGCCGGG----CCGUGGCCAGUCUUUUCUUUUCCUUUUGAGCGGCUUUUUUGUUUAAGUU--AAGUCGCUCGUUCUAAGACGAUCA ---(((((((........(------(((((..----...))))))..................(((((((((..((.....))..--))))))))).......))))))). ( -32.80, z-score = -4.00, R) >dp4.chr3 10045540 98 + 19779522 ---GAUCGUUAUCGUAUGA-----CCGCAGAGCGGUCUAUUGUAGUAUUUUUC--CCCUUUCUGAGCGGCUUUG--AGUUAAGUUU-AAGUCGCUCGUUCUAAGACGAUCA ---(((((((.......((-----((((...))))))................--........(((((((((.(--(......)).-))))))))).......))))))). ( -32.00, z-score = -3.46, R) >droPer1.super_4 5363925 98 + 7162766 ---GAUCGUUAUCGUAUGA-----CCGCAGAGCGGUCUAUUGUAGUAUUUUUC--CCCUUUCUGAGCGGCUUUG--AGUUAAGUUU-AAGUCGCUCGUUCUAAGACGAUCA ---(((((((.......((-----((((...))))))................--........(((((((((.(--(......)).-))))))))).......))))))). ( -32.00, z-score = -3.46, R) >droWil1.scaffold_180700 5148253 106 - 6630534 ---GAUCGUUAUCGUAUCAAUACAGCAAAGGGCGAUCUAUUGUAGUGUUUCUUUUUUUUUUUGUAGCGGCUUUU--AUUUAACUUUUAAGUCGCUCGUUCUAAGACGAUCA ---(((((((........(((((.(((((((....))).)))).))))).............(.((((((((..--(.......)..))))))))).......))))))). ( -24.50, z-score = -2.33, R) >droVir3.scaffold_12875 18195604 87 - 20611582 AACGAUCGUUAUCGCAUAG-----GCCAAGA----UCUAUUGUAAUAUUUU------------GAGCGGCUUUG--AUUUAAGUUU-AAGUCGCUCGUUCUAAGACGAUCA ...(((((((...((((((-----(......----)))).)))........------------(((((((((.(--((....))).-))))))))).......))))))). ( -26.70, z-score = -3.23, R) >droGri2.scaffold_15112 631285 77 - 5172618 -----UCGUUAUCGUAU--------CGCA------UCUAUUGUAAUAUUUU------------GAGCGGCUUUG--AUUUAAGUUU-AAGUCGCUCGUUCUAAGACGAUCA -----(((((...((((--------..((------.....))..))))...------------(((((((((.(--((....))).-))))))))).......)))))... ( -22.10, z-score = -3.05, R) >consensus ___GAUCGUUAUCGUAUGG_____CCAGCCAG__AUCCAUUGUAGUCUUUUCUUUCCCACUCCGAGCGGCUUUU__AUUUAAGUUU_AAGUCGCUCGUUCUAAGACGAUCA ...(((((((..........................(....)......................((((((((...............))))))))........))))))). (-13.02 = -13.30 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:40 2011