| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,932,663 – 20,932,781 |
| Length | 118 |
| Max. P | 0.593139 |
| Location | 20,932,663 – 20,932,781 |
|---|---|
| Length | 118 |
| Sequences | 12 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 76.31 |
| Shannon entropy | 0.49735 |
| G+C content | 0.54086 |
| Mean single sequence MFE | -35.88 |
| Consensus MFE | -15.89 |
| Energy contribution | -15.86 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20932663 118 + 21146708 UACGAUAGUC-GGACCGAGAGAAUUCGGGCC-ACAAUGAGAUCAAACAGAACGCUCCAGGACACCCUGGUGGGCAUUAAAGAAGCCGCUCGAGAUCGGUGCAUUUGAAGUC-AAACCGAUG .......(((-(((((((.....((((((((-((...(((.((.....))...)))((((....)))))))(((.........)))))))))).)))))...((((....)-)))))))). ( -36.00, z-score = -1.76, R) >droSim1.chr2R 19385378 118 + 19596830 UACGAGAGUC-GGACCGAGAGGAUCCGGGCC-ACAAUGAGAUCAAACAGAACGCUCCAGGACACCCUGGUGGGCAUUAAAGAUGCCGCUCGAGAUCGGUGCAUUUGAAGUC-AAACCGAUG ..((((..((-(((((....)).)))))..(-((...(((.((.....))...)))((((....)))))))((((((...)))))).))))..((((((....(((....)-)))))))). ( -38.10, z-score = -1.57, R) >droSec1.super_23 790490 118 + 989336 UACGAGAGUC-GGACCGAGAGGAUCCGGGCC-ACAAUGAGAUCAAACAGAACGCUCCAGGACACCCUGGUGGGCAUUAAAGAUGCCGCUCGAGAUCGGUGCAUUUGAAGUC-AAACCGAUG ..((((..((-(((((....)).)))))..(-((...(((.((.....))...)))((((....)))))))((((((...)))))).))))..((((((....(((....)-)))))))). ( -38.10, z-score = -1.57, R) >droYak2.chr2R 20900005 118 + 21139217 UACGAGAGUC-GGACCGAGAGGAUCCGGGCC-ACAAUGAGAUCAAACAGAACGCUCCAGGACACCCUGGUGGGCAUUAAAGAAGCCGCUCGAGAUCGGUGCAUUUGAAGUC-AAAGCGCUG ..((((...(-(((((....)).))))(((.-....((....))........((((((((....)))))..))).........))).))))....((((((.((((....)-))))))))) ( -39.50, z-score = -1.74, R) >droEre2.scaffold_4845 22312328 113 + 22589142 -----GAGUC-GGACCGGGAGGAUCCGGGCC-ACAAUGAGAUCAAACAGAACGCUCCAGGACACCCUGGUGGGCAUUAAAGAAGCCGCUCGAGGUCGGUGCAUUUGAAGUC-AAAGCGAUG -----...((-(((((....)).)))))(((-((..((((.............(.(((((....))))).)(((.........))).))))..)).)))((.((((....)-))))).... ( -34.20, z-score = 0.04, R) >droAna3.scaffold_13266 12235222 105 + 19884421 ---------------UGCGAGCGUCGGAGCCCACAAUGGGAUCAAACAGGCCUCGCCAGGACACCCUGGUGGGCAUUAAAGACGCCGCUCGAGAUCGGUGCAUUUGAAGUC-GAGGCGAUG ---------------.(((.(((((.((.(((.....))).))......(((.(((((((....))))))))))......)))))).(((((..((((.....))))..))-))))).... ( -44.20, z-score = -2.64, R) >dp4.chr3 10042561 119 + 19779522 GACAAGAGUCAGGGCUGAGAUGAUCAGGGCC-ACAAUGAGAUCAAACAGAACGCACCAGGACACCCUGGUAGGCAUUAAAGAUGCCGCCCAAGAUCGGUGCAUUUGAAGUC-AAAGCGAUG (((....)))...(((..(((..(((((..(-((.....((((...........((((((....)))))).((((((...))))))......)))).)))..))))).)))-..))).... ( -35.70, z-score = -1.96, R) >droPer1.super_4 5360942 119 + 7162766 GACAAGAGUCAGGGCUGAGAUGAUCAGGGCC-ACAAUGAGAUCAAACAGAACGCACCAGGACACCCUGGUGGGCAUUAAAGAUGCCGCCCAAGAUCGGUGCAUUUGAAGUC-AAAGCGAUG (((....)))...(((..(((..(((((..(-((.....((((..........(((((((....)))))))((((((...))))))......)))).)))..))))).)))-..))).... ( -38.60, z-score = -2.25, R) >droWil1.scaffold_180700 5143595 102 - 6630534 ------------------CACAACGUUCGUUUACAAUGAGAUCAAACGGAACGCAUCAGGACACCCUGGUGGGCAUUAAAGAUGCCGCACACAAUCGGUGCAUUUGAAGUU-GUGGCGUUG ------------------((((((.(((((.....))))).(((((.......(((((((....)))))))((((((...))))))((((.......)))).))))).)))-)))...... ( -33.10, z-score = -2.04, R) >droVir3.scaffold_12875 18191610 96 - 20611582 ------------------------GAGUCUCAACAAUGAGAUCAAACGGAACGACGCAGGACACCCUGGUGGGCAUUAAAGAUGCCGCCGCUGAUCGGUGCAUUUGAAGUC-GAGGCGCUG ------------------------..(((((.((((((.(((((..(((....((.((((....)))))).((((((...)))))).))).)))))....))))....)).-))))).... ( -30.10, z-score = -0.73, R) >droMoj3.scaffold_6496 22818091 95 + 26866924 -------------------------AGUCCCAACAAUGAGAUCAAACGGAUCGACCCAGGACACCCUGGUGGGCAUUAAAGACGCCGACGACGAUCGGUGCAUUUGAAGUC-GAGGCGCUG -------------------------.(.((((.......((((.....))))...(((((....)))))))))).....((.((((..((((..((((.....)))).)))-).)))))). ( -32.40, z-score = -1.86, R) >droGri2.scaffold_15112 627164 93 - 5172618 ----------------------------ACUGACAAUGAGAUCAAAUGGAACGACGCAGGACACCCUGCUGGGCAUUAAAGAUGCCGCCGCUGAGCGGUGCAUUUGAUGUUUGAGGCGCUG ----------------------------...(.....((.((((((((.......(((((....)))))..((((((...))))))(((((...))))).)))))))).)).....).... ( -30.50, z-score = -1.74, R) >consensus _____GAGUC_GG_CCGAGAGGAUCCGGGCC_ACAAUGAGAUCAAACAGAACGCUCCAGGACACCCUGGUGGGCAUUAAAGAUGCCGCUCGAGAUCGGUGCAUUUGAAGUC_AAAGCGAUG ..................................((((.((((............(((((....)))))..(((.........)))......))))....))))................. (-15.89 = -15.86 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:39 2011