| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,888,054 – 20,888,145 |
| Length | 91 |
| Max. P | 0.604584 |
| Location | 20,888,054 – 20,888,145 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 72.81 |
| Shannon entropy | 0.49738 |
| G+C content | 0.53250 |
| Mean single sequence MFE | -33.70 |
| Consensus MFE | -12.60 |
| Energy contribution | -12.70 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20888054 91 - 21146708 -UUGCGGUGGGGGGUGUGGUGAUCCCGGGGUGCAGUGCGAAUCUAGUUCGCUG-------UAUUCUACAUGGGAUCAUUGGCGCCAUACCA--AGCAACAG------- -((((..(((..(((((.((((((((((((((((..((((((...))))))))-------))))))....))))))).).)))))...)))--.))))...------- ( -40.80, z-score = -3.50, R) >droSim1.chr2R 19339694 94 - 19596830 -UUGUGGUGGGGGGUGUGGUGAUCCCGGGGUGCAGUGCGAAUCUAGUUCGCUG-------UAUUCUAUAUGGGAUCAUUGGCGCCAUACCAAUAGCUACAAG------ -(((((((.((.(((((.((((((((((((((((..((((((...))))))))-------))))))....))))))).).)))))...))....))))))).------ ( -42.40, z-score = -4.25, R) >droSec1.super_23 745015 85 - 989336 --------UUGUGGUGGGG--AUCCCGGGGUGCAGUGCGAAUCUAGUUCGCUG-------UAUUCUAUAUGGGAUCAUUGGCGCCAUACCAAUAGCUACAAG------ --------(((((((...(--(((((((((((((..((((((...))))))))-------))))))....))))))(((((.......))))).))))))).------ ( -32.30, z-score = -2.50, R) >droYak2.chr2R 20852449 92 - 21139217 ---------UGUGGCGGGGUGAUCCCGGGGUGCAGUGCGAAUCUAGUUCGCUG-------UAUUCUAGAUGGGAUCAUUGGCGCCAUAUCAAUAGCUACGAGCAACAG ---------(((((((.(((((((((((((((((..((((((...))))))))-------))))))....)))))))))..)))))))......((.....))..... ( -36.60, z-score = -2.77, R) >droEre2.scaffold_4845 22262877 99 - 22589142 ---------UGUGGCGGGGUGAUCCCGGGGUGCAGUGCGAAUCUAGUUCGCUGUAUUCUAUAUUCUAGAUGGGAUCAUUGGCGCCAUAUCAAUAGCUACAAGCAAAAG ---------(((((((.(((((((((((((((((..((((((...))))))))))))))...........)))))))))..)))))))......((.....))..... ( -35.20, z-score = -2.51, R) >droAna3.scaffold_13266 12181086 92 - 19884421 ---UCGACCGGGCAGGGGCAGGAGGCAGGGGGCAGUGCAAAUCUAGUUCGCUA-------GAUUCUAGAUGGGAUCAGUGGCGCCAUAUCAAUAGCAGCUGG------ ---....((((.(..((((.(((.(((........)))...))).))))((((-------((((((....)))))).(((....))).....)))).)))))------ ( -24.00, z-score = 0.98, R) >dp4.chr3 2002564 97 - 19779522 CUUGGGGUUUGGGGUUUGG--GGCUUGGGGUGCAGUGCAAAUCUAGUUCGAAC-------GAUUCUGGACGGGAUCACUGGCGCCAUAUCAAUAGCGGGGCAAAAG-- ((((.(((.(((.((..((--((((.((..(((...)))..)).)))))....-------((((((....)))))).)..)).))).))).....)))).......-- ( -24.60, z-score = 0.40, R) >consensus _____G___UGGGGUGGGGUGAUCCCGGGGUGCAGUGCGAAUCUAGUUCGCUG_______UAUUCUAGAUGGGAUCAUUGGCGCCAUAUCAAUAGCUACAAG______ .................((.....))..(((((...((((((...))))))..........(((((....))))).....)))))....................... (-12.60 = -12.70 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:37 2011