| Sequence ID | dm3.chr2L |
|---|---|
| Location | 434,793 – 434,893 |
| Length | 100 |
| Max. P | 0.542517 |
| Location | 434,793 – 434,893 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.70 |
| Shannon entropy | 0.39257 |
| G+C content | 0.49160 |
| Mean single sequence MFE | -31.78 |
| Consensus MFE | -17.10 |
| Energy contribution | -19.46 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 434793 100 + 23011544 --------UACCGCAGACUCAAAAGAUCGCCUUGCCAUUUUCUCAAAGAAUUCAAGACUGCGAAGAAUGUUGAGGGAUCUUUACG------UGGAGUGUGUGGGUUUAAACGGG --------..(((((.((((.(((((((.((((..((((((.((..((.........))..))))))))..)))))))))))...------..)))).)))))........... ( -31.20, z-score = -2.24, R) >droEre2.scaffold_4929 487173 108 + 26641161 UACCUCGACUUUACAGACUCCAAAGAUCGCCUCGCCAUCUUCUCAAAGAAGUCAAGAUUGUGAGGACUGGUGAGGAAUCUUUCGG------UGGAAUGUGUGGGCUGAAACGGG ..(((((.((.((((..(.((((((((..(((((((((((((.(((...........))).))))).)))))))).)))))).))------.)...)))).))..)))...)). ( -34.50, z-score = -1.30, R) >droYak2.chr2L 419622 87 + 22324452 ---------------------------UGCCUCGCCGUUUUCUCAAAGAAGUCGAGAUUGUGGGGAAUGGUUAGGAAUCUGUCGGAGUCUGUGGAGUGUGUGGGUUGAAACGGG ---------------------------..(((.((((((..(.((....(((....))).)))..)))))).)))((((((.((.(.((....)).).))))))))........ ( -20.40, z-score = 0.36, R) >droSec1.super_14 418531 100 + 2068291 --------UACCGCAGACUCAACAGAUCGCCUCGCCAUUUUCUCAAAGAAGUCAAGACUGUGAAGAAUGCUGAGGGAUCUUUCCG------UGGAGUGUGUGGGUUGAAACGGG --------..(((((.((((.(((((((.(((((.((((((.(((....(((....))).))))))))).))))))))))....)------).)))).)))))........... ( -35.80, z-score = -2.41, R) >droSim1.chr2L 441248 100 + 22036055 --------CACCGCAGACUCAAAAGAUCGCCUCGCCAUUUUCUCAAAGAAGUCAAGACUGUGAAGAAUGCUGAGGGAUCUUUCCG------UGGAGUGUGUGGGUUGAAACGGG --------..(((((.((((.(((((((.(((((.((((((.(((....(((....))).))))))))).))))))))))))...------..)))).)))))........... ( -37.00, z-score = -2.86, R) >consensus ________CACCGCAGACUCAAAAGAUCGCCUCGCCAUUUUCUCAAAGAAGUCAAGACUGUGAAGAAUGCUGAGGGAUCUUUCCG______UGGAGUGUGUGGGUUGAAACGGG ..........(((((.((((.(((((((.(((((.(((((((.((.............)).))))).)).))))))))))))...........)))).)))))........... (-17.10 = -19.46 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:49 2011