| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,850,084 – 20,850,191 |
| Length | 107 |
| Max. P | 0.626330 |
| Location | 20,850,084 – 20,850,191 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 76.87 |
| Shannon entropy | 0.40807 |
| G+C content | 0.53430 |
| Mean single sequence MFE | -36.90 |
| Consensus MFE | -20.66 |
| Energy contribution | -22.54 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.626330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20850084 107 - 21146708 GCAUC-GGGGCGGGCGCUGGCCAGGGAUAGAACUGUAGGGUAGAGGUCUUUAAAUG--GCGCAGUCACUGAAACUAAAUUUAUCAGUGCGCUCGGCGCUCGCUCUGUCAA ....(-(((((((((((((((((.....(((.((.((...)).)).))).....))--))((.(.((((((...........))))))))).)))))))))))))).... ( -43.80, z-score = -3.10, R) >droSim1.chr2R 19301383 107 - 19596830 GCAUC-GGGGCGGGCGCUGGCCAGGGACAGAACUGUAGGGUAGAGGUCUUUAAAUG--GCGCAGUCACUGAAACUAAAUUUAUCAGUGCGCUCGGCGCUCACUCUGUCAA ....(-((((.(((((((((((((((((...(((....)))....)))))....))--))((.(.((((((...........))))))))).)))))))).))))).... ( -38.80, z-score = -1.85, R) >droSec1.super_23 707041 106 - 989336 GCAUC--GGGCGGGCGCUGGCCAGGGACAGAACUGUAGGGUAGAGGUCUUUAAAUG--GCGCAGUCACUGAAACUAAAUUUAUCAGUGCGCUCGGCGCUCACUCUGUCAA .....--(((.(((((((((((((((((...(((....)))....)))))....))--))((.(.((((((...........))))))))).)))))))).)))...... ( -36.10, z-score = -1.13, R) >droEre2.scaffold_4845 22223069 107 - 22589142 GCACCGGGGGCGAGCGC-GGCCAGGGAUAGUACUGUAGGGUAGAGGUCUUUAAAUG--GCGCAGUCACUGAAACUAAAUUUAUCAGUGCGCUCGGCGCUCGCUCUGUCAA ......(((((((((((-.(((((((((..((((....))))...)))))....))--))((.(.((((((...........)))))))))...)))))))))))..... ( -40.60, z-score = -1.73, R) >droGri2.scaffold_15245 1598290 102 + 18325388 --------GAUUUGGGUUGCCGAAGAACAUUUUACUAGAUUUGAGUGUUCCGAGUGCUGCGCAGCUAGUUCAACUAAAUUUAUCAACGCCAUAGACAAGGGCGGCCCCAA --------.....((((((((...((((((((..........)))))))).(((.(((....)))...)))............................))))))))... ( -25.20, z-score = -0.29, R) >consensus GCAUC_GGGGCGGGCGCUGGCCAGGGACAGAACUGUAGGGUAGAGGUCUUUAAAUG__GCGCAGUCACUGAAACUAAAUUUAUCAGUGCGCUCGGCGCUCGCUCUGUCAA .......((((((((((((...((((((....(((.....)))..)))))).......((((....(((((...........))))))))).))))))))))))...... (-20.66 = -22.54 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:34 2011