| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,830,820 – 20,830,886 |
| Length | 66 |
| Max. P | 0.911253 |
| Location | 20,830,820 – 20,830,886 |
|---|---|
| Length | 66 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 74.86 |
| Shannon entropy | 0.32001 |
| G+C content | 0.34848 |
| Mean single sequence MFE | -10.61 |
| Consensus MFE | -10.10 |
| Energy contribution | -9.43 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20830820 66 + 21146708 UGCCCAUUCAUUAUGAAAGGGUAAGCACUCAAUAAAGUUAGUGCUUCUCAUAUUUCCUCAGGUUAG (((((.(((.....))).)))))((((((.(((...)))))))))..................... ( -14.20, z-score = -2.01, R) >droSec1.super_23 687964 51 + 989336 UGCCCAAUAAUUAUUACAGGGUAAGCACUUAAUAAAGUUAGUGUGUCUCUU--------------- (((((.............))))).(((((..........))))).......--------------- ( -8.82, z-score = -0.78, R) >droSim1.chr2R 19283706 51 + 19596830 UGCCCAAUAAUUAUUACAGGGUAAGCACUUAAUAAAGUUAGUGUGUCUCUU--------------- (((((.............))))).(((((..........))))).......--------------- ( -8.82, z-score = -0.78, R) >consensus UGCCCAAUAAUUAUUACAGGGUAAGCACUUAAUAAAGUUAGUGUGUCUCUU_______________ (((((..((.....))..))))).(((((..........)))))...................... (-10.10 = -9.43 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:29 2011