| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,812,659 – 20,812,785 |
| Length | 126 |
| Max. P | 0.799914 |
| Location | 20,812,659 – 20,812,785 |
|---|---|
| Length | 126 |
| Sequences | 12 |
| Columns | 153 |
| Reading direction | reverse |
| Mean pairwise identity | 69.76 |
| Shannon entropy | 0.60429 |
| G+C content | 0.32577 |
| Mean single sequence MFE | -25.05 |
| Consensus MFE | -13.00 |
| Energy contribution | -11.98 |
| Covariance contribution | -1.02 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799914 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 20812659 126 - 21146708 AGAAGAGUUAUCAAAGCGUAAAGCGCAACAAAUUGAUUGCUAAUUGAUAC-------UGAUGUGUCGAUUAUUUUAUGAUUAUUCUUUAUGAUCGUUAGACGUUGAUA-CCCGCACC--AAACCUGAUUCAAAUUU----------------- ....((((((.....(((.....)))......(((..(((((((((((((-------....))))))))))(((.((((((((.....)))))))).)))........-...))).)--))...))))))......----------------- ( -26.40, z-score = -1.72, R) >droSim1.chr2R 19265300 126 - 19596830 AGAAGAGUUAUCAAAGCGUAAAGCGCAACAAAUUGAUUGCUAAUUGAUAC-------UGAUGUGUCGAUUAUUUUAUGAUUAUUCUUUAUGAUCGUUAGACGUUGAUA-CCCGCACC--AAACCUGAUUCAGAUUU----------------- ....((((((.....(((.....)))......(((..(((((((((((((-------....))))))))))(((.((((((((.....)))))))).)))........-...))).)--))...))))))......----------------- ( -26.40, z-score = -1.51, R) >droSec1.super_23 669658 126 - 989336 AGAAUACUUAUCAAAGCGUAAAGCGCAACAAAUUGAUUGCUAAUUGAUAC-------UGAUGUGUCGAUUAUUUUAUGAUUAUUCUUUAUGAUCGUUAGACGUUGAUA-CCCGCACC--AAACCUGAUUCAGAUUU----------------- .((((...(((((..((((..((((((((.....).))))((((((((((-------....))))))))))......((((((.....)))))))))..)))))))))-.......(--(....))))))......----------------- ( -25.40, z-score = -1.66, R) >droYak2.chr2R 20776342 124 - 21139217 --AAGGGUUAUCAAAGCGUGGAGCGCAACAAAUUGAUUGCUAAUUGAUAC-------UGAUGUGUCGAUUAUUUUAUGAUUAUUCUUUAUGAUCGUUAGCCGCUGAAA-CCCGCACC--AAACCUGAUUCAGAUUU----------------- --..(((((.(((..(((...((((((((.....).))))((((((((((-------....))))))))))......((((((.....)))))))))...))))))))-))).....--.................----------------- ( -30.10, z-score = -1.65, R) >droEre2.scaffold_4845 22182778 130 - 22589142 --AAGGGCUAUCAAAGCGUGGAGCGCAGCAAAUUGAUUGCUAAUUGAUAC-------UGAUGUGCCGAUUAUUUUAUGAUUAUUCUUUAUGAUCGUUAGACGUUGAUC-CCCGCACC--AAACCUGAUUCAGAUUCAGAUUU----------- --..((..((((((.(((.....)))(((((.....)))))..)))))).-------...((((..(((((.(((((((((((.....))))))).))))...)))))-..))))))--....((((.......))))....----------- ( -29.20, z-score = -0.52, R) >droAna3.scaffold_13266 12101474 136 - 19884421 CGCAGAGCAAUCAAAGCGUAAAGCGAAACAAAUUAAUUGCUAAUUGAUACUGUCGAUUGGUGUGUAGAUUACCUUAUGAUUGUUCUUUAUGAUCGUUAAGCGCCGAUAUCCCGCUCCAAAAACCUGACUCCACAUU----------------- .((((((((((((..((.....))..............((((((((((...))))))))))...............)))))))))).....((((........)))).....))......................----------------- ( -26.50, z-score = -0.49, R) >dp4.chr3 1912514 146 - 19779522 GGAACAGUAUUCAAAGCAUAAAGCGUAACCAAUUGAUUGCUAAUUGAUAU-------UGAUGUGUCGAUUAUUUUAUGAUUAUUCUUUAUGAUCGUUAAAUUUGGAUAUGCCAAAAGGCGAGCGAGAUCGAACACCAAACUUGAUUCAAAUUU .(((((((..............(((((.((((........((((((((((-------....))))))))))(((.((((((((.....)))))))).))).)))).))))).....((.(..((....))..).))..)).)).)))...... ( -28.60, z-score = -0.34, R) >droPer1.super_2 2085686 146 - 9036312 GGAACAGUAUUCAAAGCAUAAAGCGUAACCAAUUGAUUGCUAAUUGAUAU-------UGAUGUGUCGAUUAUUUUAUGAUUAUUCUUUAUGAUCGUUAAAUUUGGAUAUGCCAAAAGGCGAGCGAGAUCGAACACCAAACUUGAUUCAAAUUU .(((((((..............(((((.((((........((((((((((-------....))))))))))(((.((((((((.....)))))))).))).)))).))))).....((.(..((....))..).))..)).)).)))...... ( -28.60, z-score = -0.34, R) >droWil1.scaffold_180697 1847040 112 - 4168966 -GAAAUUUUUUUGAAGCAUAAAGCGUAACAAAUUGAUUGCUAAUUGAUAU-------UGAUAUGUCGAUUAAUUUAUAAUUAUUCUUUAUGAUCGUUAGAAUCAGA---ACCAGUUUGUAGUU------------------------------ -.(((((.((((((..(((((((.(((((((.....))).((((((((((-------....))))))))))........)))).))))))).((....)).)))))---)..)))))......------------------------------ ( -17.60, z-score = -0.07, R) >droVir3.scaffold_12823 2427037 113 - 2474545 --GCAAAAAUUGAAAGCGUAAAGCGUAACAAAUUGAUUGCUAAUUGAUAU-------UGAUAUGUCGAUUAUUUUAUGAUUAUUCUUUAUGAUGGUUAAAGCCGAAAGCUGAAAGCCAAAAA------------------------------- --((((.((((....(((.....)))....))))..))))((((((((((-------....))))))))))..((((((.......))))))(((((..((.(....)))...)))))....------------------------------- ( -23.20, z-score = -1.60, R) >droMoj3.scaffold_6496 1773367 112 - 26866924 --AAAAGAAUUGAAAGCGUGAAGCGCAACAAAUUGAUUGCUAAUUGAUAU-------UGAUAUGUCGAUUAUUUUAUGAUUAUUCUUUAUGAUGGUUAG----GAAAACGAAAAACCCGAAAUUC---------------------------- --.(((((((......(((((((.(((((.....).))))((((((((((-------....)))))))))))))))))...))))))).....((((.(----.....)....))))........---------------------------- ( -19.20, z-score = -0.81, R) >droGri2.scaffold_15245 2665050 103 + 18325388 ----------UGAAAGCGUAAAGCGUAACAAAUUGAUUGCUAAUUGAUAU-------UGAUAUGUCGAUUAUUUUAUGAUUAUUCUUUAUGAUCAUUAAAUCUGAUAGC--AAACUCUAAAA------------------------------- ----------.....(((.....)))..........((((((((((((((-------....)))))))).((((.((((((((.....)))))))).))))....))))--)).........------------------------------- ( -19.40, z-score = -1.52, R) >consensus _GAAGAGUUAUCAAAGCGUAAAGCGCAACAAAUUGAUUGCUAAUUGAUAC_______UGAUGUGUCGAUUAUUUUAUGAUUAUUCUUUAUGAUCGUUAGACGUGGAUA_CCCACACC__AAACCUGAUUCA_AUUU_________________ ................(((((((.((((........))))((((((((((...........)))))))))).............))))))).............................................................. (-13.00 = -11.98 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:29 2011