| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,802,757 – 20,802,851 |
| Length | 94 |
| Max. P | 0.751881 |
| Location | 20,802,757 – 20,802,851 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 61.08 |
| Shannon entropy | 0.87169 |
| G+C content | 0.50577 |
| Mean single sequence MFE | -23.67 |
| Consensus MFE | -11.12 |
| Energy contribution | -10.46 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.29 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751881 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20802757 94 + 21146708 -----AUAUAGUGUAGAC---CUUAUG----AAUAUGCUCAAAUUUGAUUUUCCGCAGGUGAGUCGUCGAGGCACUGCCUGCUCCAGUCGAGCCUCGUCUCGAAAA -----......((.((((---....((----(......)))..(((((((....((((((.(((.((....)))))))))))...)))))))....)))))).... ( -20.30, z-score = 0.40, R) >droSim1.chr2R 19255373 94 + 19596830 -----AUAUACUUCAGAC---CUCAUG----AAUAUGCUCAAAUUUGAUUUUCCGCAGGUGAGUCGUCGAGGCACCGCCUGCUCCAGUCGAGCCUCGUCUCGAAAA -----......(((((((---....((----(......)))..(((((((....(((((((.((.((....)))))))))))...)))))))....)))).))).. ( -23.40, z-score = -0.77, R) >droSec1.super_23 659761 101 + 989336 -----AUAUACUUUAUAUAUGCUAAUGCUAUAAUAUGCUCAUAUUUAAUUUUCCGCAGGUGAGUCGUCGAGGCACCGCCUGCUCCAGUCGAGCCUCGUCUCGAAAA -----.......(((.(((((.....((........)).))))).)))......(((((((.((.((....))))))))))).....(((((......)))))... ( -22.90, z-score = -0.92, R) >droYak2.chr2R 20766213 94 + 21139217 -----AUAUACUGUGGAC---CUCAUG----AAGGUGCUUAAACUUGAUUCUCCGCAGGUGAGUCGUCGAGGCACCGCCUGCUCCAGUCGAGCCUCGUCUCGGAAA -----.....(((.((((---......----..(((((((.....((((((.((...)).))))))...)))))))....((((.....))))...)))))))... ( -28.80, z-score = -0.54, R) >droEre2.scaffold_4845 22172828 94 + 22589142 -----AUAUUCAUUGGAC---CUCAUG----AAUGUGCUUAAAUGCGAUUCUUCGCAGGUGAGUCGUCGUGGCACCGCCUGCUCCAGUCGAGCCUCGUCUCGAAAA -----.......(((((.---.....(----(((.(((......)))))))...(((((((.((.((....))))))))))))))))(((((......)))))... ( -28.60, z-score = -1.53, R) >droAna3.scaffold_13266 12091225 88 + 19884421 ------------AAGGAUUCAAUUUCUAGACUAAUC--CC---UGCCGCCCC-AACAGGUCAGUCGUCGUGGCACCGCCUGCUCCAGCCGCGCCUCUUCGCGCAAA ------------..(((...........((((....--((---((.......-..))))..))))...(((((...))).)))))....((((......))))... ( -19.60, z-score = 0.41, R) >dp4.chr3 1892664 100 + 19779522 ------UCGCCAUCCGAUUUCUUACUAUACUUAUGGAUAACUUUUCGAGUUCUUGCAGGUCAGUCGUCGGGGAACCGCCUGCUCCAGUCGUGCCUCAUCGCGGAAG ------......((((...........(((...((((.(((((...)))))...(((((........(((....))))))))))))...)))........)))).. ( -20.91, z-score = 1.45, R) >droPer1.super_2 2075445 100 + 9036312 ------UCGCCAUCCGAUUUCUUACUAUACUUAUGGAUAACUUUUCGAGUUCUUGCAGGUCAGUCGUCGGGGAACCGCCUGCUCCAGUCGUGCCUCAUCGCGGAAG ------......((((...........(((...((((.(((((...)))))...(((((........(((....))))))))))))...)))........)))).. ( -20.91, z-score = 1.45, R) >droWil1.scaffold_180697 1833241 92 + 4168966 -------AUCCAUUUUAAGAUUUGU-GUAAAUAUUGACUC---AUCUAUUUU---UAGGUUAGCCGCAGGGGCACUGCUUGCUCAAGUCGUGCCUCUUCACGCAAA -------.............(((((-((.......(.((.---(((((....---))))).)).)(.((((((((.((((....)))).)))))))).)))))))) ( -26.80, z-score = -2.95, R) >droVir3.scaffold_12823 2414963 96 + 2474545 -------GGGCAUCUAAAAUAUUGUCGUUACUAAUUCCCC---UCCUUUUUUGCUCAGGUGAGUCGUCGCGGCACAGCCUGCUCCAGUCGCGCCUCCUCACGCAAA -------.((((..........))))..............---......(((((....(((((..(.((((((..((....))...)))))).)..)))))))))) ( -22.10, z-score = -0.62, R) >droMoj3.scaffold_6496 1761327 102 + 26866924 CUCUGAAAUAUGAUGGAUACCUUGCUCCGCUUGACUAAUC---AAUCCUUCU-UAUAGGUAAGCCGUCGUGGCACUGCCUGCUCCAGUCGCGCCUCCUCGCGCAAG ..(((...((((((((.(((((........((((....))---)).......-...)))))..))))))))(((.....)))..)))..((((......))))... ( -24.17, z-score = -0.52, R) >droGri2.scaffold_15245 2652601 106 - 18325388 AAAAGAAUUGUAGCAAACAGAGAAUUCCAUUUGAUUCCACGUGUACUGUCCGACACAGGUGAGCCGUCGAGGCACUGCCUGCUCCAGUCGCGCCUCCUCGCGGAAA ......((((.((((..(((.(((((......)))))(((.(((..........))).))).(((.....))).)))..)))).))))((((......)))).... ( -25.60, z-score = 0.63, R) >consensus _____AUAUACAUUAGAC___CUAAUG___UUAUGUGCUCA_AUUCGAUUUUCCGCAGGUGAGUCGUCGAGGCACCGCCUGCUCCAGUCGAGCCUCGUCGCGAAAA .......................................................(((((..(((.....)))...))))).......((((......)))).... (-11.12 = -10.46 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:28 2011