| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,788,120 – 20,788,177 |
| Length | 57 |
| Max. P | 0.609379 |
| Location | 20,788,120 – 20,788,177 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 70.57 |
| Shannon entropy | 0.53514 |
| G+C content | 0.40639 |
| Mean single sequence MFE | -10.59 |
| Consensus MFE | -6.72 |
| Energy contribution | -6.42 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.609379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20788120 57 - 21146708 -----UUGGCCAGAGCUUAAUAAAAGCCUAGCCACUUUCUUAUACAGUAGCAGGAAAUUUAG -----.((((.((.((((.....)))))).)))).((((((..........))))))..... ( -11.70, z-score = -0.83, R) >droMoj3.scaffold_6496 1746454 62 - 26866924 UUCUCGUGCAUAGAACCACCCAAUGCACAGGGUUUCAUUUCAUAUAGACGAGGAAAAUAUAG (((((((..((((((..((((........)))).....))).)))..)))))))........ ( -13.70, z-score = -2.59, R) >droSim1.chr2R 19240694 57 - 19596830 -----UUGGCCAGAGCUUAAUACAAGCCUAGCCACAUUCUUAUACAGUAGCAGGAAAUUUAG -----.((((.((.((((.....)))))).))))..(((((..........)))))...... ( -11.00, z-score = -1.12, R) >droSec1.super_23 645156 57 - 989336 -----UUGGCCAGAGCUUAAUACAAGCCUAGCCGCAUUCUUAUACAGUAGCAGGAAAUUUAG -----..(((.((.((((.....)))))).)))((...((.....))..))........... ( -10.40, z-score = -0.27, R) >droYak2.chr2R 20751252 57 - 21139217 -----UGGGCCGGAGCUUAAAAAAAGCCUAGCCGAUUUCUUAUACAGUAUCAGAGAAUUUAG -----..(((..(.((((.....)))))..)))..(((((.(((...))).)))))...... ( -12.20, z-score = -1.00, R) >droEre2.scaffold_4845 22157993 57 - 22589142 -----UGGGCCGGAGAUUAAUAAAAGCCUAGCCGACAUCUUAUACAGUAGCAGAACAUUUUG -----..(((..(..............)..)))............................. ( -4.54, z-score = 1.64, R) >consensus _____UUGGCCAGAGCUUAAUAAAAGCCUAGCCGCAUUCUUAUACAGUAGCAGAAAAUUUAG .......(((.((.((((.....)))))).)))............................. ( -6.72 = -6.42 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:19 2011