| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,742,421 – 20,742,514 |
| Length | 93 |
| Max. P | 0.986593 |
| Location | 20,742,421 – 20,742,514 |
|---|---|
| Length | 93 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 78.58 |
| Shannon entropy | 0.41172 |
| G+C content | 0.39870 |
| Mean single sequence MFE | -18.62 |
| Consensus MFE | -13.53 |
| Energy contribution | -13.49 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.24 |
| SVM RNA-class probability | 0.986593 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20742421 93 + 21146708 ---UUCCCGUCCCUGCUCAUUCAUGCAUCCG-UC-AGAUAAUUAUUAUAAUUACCUGCGUGAGUGUAGGUUUCCAUAGACCAAAAAGGAAAAAAAAAC------------------ ---((((..........((((((((((((..-..-.))((((((...))))))..))))))))))..((((......)))).....))))........------------------ ( -18.20, z-score = -2.25, R) >droSim1.chr2R 19193895 92 + 19596830 ---UUCCCGUCCCUGCUCAUUCAUGCAUCCG-UC-AGAUAAUUAUUAUAAUUACCUGCGUGAGUGUAGGUUUCCAUAGACCAAAAAGGAAAAAAAAC------------------- ---((((..........((((((((((((..-..-.))((((((...))))))..))))))))))..((((......)))).....)))).......------------------- ( -18.20, z-score = -2.22, R) >droSec1.super_23 598894 91 + 989336 ---UUCCCGUCCCUGCUCAUUCAUGCAUCCG-UC-AGAUAAUUAUUAUAAUUACCUGCGUGAGUGUAGGUUUCCAUAGACCAAAAAGGAAAAAAAC-------------------- ---((((..........((((((((((((..-..-.))((((((...))))))..))))))))))..((((......)))).....))))......-------------------- ( -18.20, z-score = -2.20, R) >droEre2.scaffold_4845 22107104 90 + 22589142 ---CUCCCUUCCCUGCUCAUUCAUGCAUCCG-UC-GGAUAAUUAUUAUAAUUACCUGCGUGAGUGUAGGUUUCCAUAGACCAAAAAGGGAAAAAC--------------------- ---.....((((((...((((((((((....-..-((.((((((...))))))))))))))))))..((((......))))....))))))....--------------------- ( -25.90, z-score = -3.63, R) >droYak2.chr2R 20704521 90 + 21139217 ---CUCCCUUCCCUGCUCAUUCAUGCAUCCG-UCCGGAUAAUUAUUAUAAUUACCUGCGUGAGUGUAGGUUUCCAUAGACCAAAAAGGGAAAAC---------------------- ---.....((((((...(((((((((((((.-...)))((((((...))))))..))))))))))..((((......))))....))))))...---------------------- ( -27.50, z-score = -4.14, R) >droAna3.scaffold_13266 12028443 90 + 19884421 ---UUCCCUGCCCUGCUCAUUCAUGCAUCCG-UCCAGAUAAUUAUUAUAAUUACCUGCGUG-GUGUAGGUUUCCAUAGACGAAAAAAAGAACCAC--------------------- ---...(((((..(((........))).(((-..(((.((((((...)))))).)))..))-).)))))..........................--------------------- ( -15.40, z-score = -0.77, R) >dp4.chr3 9011225 112 - 19779522 ---CUCCCUGCCCUGCUCAUUCAUGCAUCCG-UCCAGAUAAUUAUAAUAAUUACCUGCGUGAGUGUAGGUUUCCAUAGACCAAAACCAAAAACAAAAAAAAGUAACCAAAAAAGAU ---..........((((((((((((((((..-....))((((((...))))))..))))))))))..((((......))))...................))))............ ( -16.40, z-score = -2.00, R) >droWil1.scaffold_180700 240458 103 + 6630534 UGCCCAUGCCCAUUGUUCAUUCAUGCAUCC-GUCCAGAUAAUUAUUAUAAUUACCUGCGUGAGUGUAGGUUACCAUAGACAAAAAAAAAAC-ACAAAAAAUAAAA----------- ............(((((((((((((((((.-.....))((((((...))))))..))))))))))..((...))...))))).........-.............----------- ( -13.10, z-score = -0.21, R) >droVir3.scaffold_12875 1495454 98 + 20611582 CACCCUGCUACCCUGCUCAUUCAUGCAUCCCCUCGAGAUAAUUAUAAUAAUUACCUGCGUGAGUGCAGGUUUCCAUAGACCGACAAAAAAAAAAAAAC------------------ ...........(((((..(((((((((((.....))..((((((...))))))..)))))))))))))).............................------------------ ( -16.80, z-score = -2.23, R) >droGri2.scaffold_15245 8821290 97 - 18325388 ------CGCACCCUGCUCAUUCAUGCAUCCCAUCGACAUAAUUAUAAUAAUUACCUGCGUGAGUGCAGGUUUCCAUAGACCGAAAAAAAACUACGAAAAACAA------------- ------.....(((((..(((((((((((.....))..((((((...))))))..))))))))))))))..................................------------- ( -16.50, z-score = -1.75, R) >consensus ___CUCCCUUCCCUGCUCAUUCAUGCAUCCG_UC_AGAUAAUUAUUAUAAUUACCUGCGUGAGUGUAGGUUUCCAUAGACCAAAAAGAAAAAAAAAA___________________ ...........(((((..(((((((((((.......))((((((...))))))..))))))))))))))............................................... (-13.53 = -13.49 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:14 2011