| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,721,131 – 20,721,211 |
| Length | 80 |
| Max. P | 0.537961 |
| Location | 20,721,131 – 20,721,211 |
|---|---|
| Length | 80 |
| Sequences | 13 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 80.61 |
| Shannon entropy | 0.43399 |
| G+C content | 0.53763 |
| Mean single sequence MFE | -24.87 |
| Consensus MFE | -15.31 |
| Energy contribution | -15.79 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20721131 80 - 21146708 UGUGUCCGGGAGGUAGAUAAUGUGAGGGUGAGCCGCUGUUCGAGCCACCGCCGUUAUUACCGCCUGUGGAA-UGGACAAGA------ ..((((((((.(((.(((((((.(..((((.((((.....)).)))))).))))))))))).)))......-.)))))...------ ( -27.01, z-score = -1.33, R) >anoGam1.chr2L 7358113 78 + 48795086 UGUGUCCGGGAGGUAGGAAAUGCGAAGGCGAACCACUGCUCGAUCCUCCACCG--GGUGCUGUGGAAGGAAAUUGUGAGA------- .(..(((((..((.((((...(((..((....))..)))....)))))).)))--))..)....................------- ( -23.10, z-score = -0.11, R) >droGri2.scaffold_15245 8795467 78 + 18325388 UAUGUCCGGGAGGUAGAUAAUGUGAGGGUGAGCCGCUAUUUGAGCCACCGCCGUUAUUACCGCCUGC----AAGACAUAAAA----- ((((((((((.(((.(((((((.(..((((.((((.....)).)))))).))))))))))).)))).----..))))))...----- ( -27.90, z-score = -3.06, R) >droMoj3.scaffold_6496 4570616 87 - 26866924 UAUGUCCGGGAGGUAGAUAAUGUGAGGGUGAGCCGCUAUUCGAGCCACCGCCGUUAUUACCGCCUGCAAGUGAGAAAAGAAAUGAAA (((...((((.(((.(((((((.(..((((.((((.....)).)))))).))))))))))).))))...)))............... ( -24.10, z-score = -1.58, R) >droVir3.scaffold_12875 1465390 80 - 20611582 UAUGUCCGGGAGGUAGAUAAUGUGAGGGUGAGCCGCUAUUUGAGCCACCGCCGUUAUUACCGCCUGU-UCGAAGACCAAAA------ ..((..((((.(((.(((((((.(..((((.((((.....)).)))))).))))))))))).)))).-.))..........------ ( -24.40, z-score = -1.65, R) >droWil1.scaffold_180700 194741 83 - 6630534 UAUGUCCGGGAGGUAGAUAAUGUGAUGGGGAACCGCUAUUCGAGCCACUGCCGUUAUUACCGCCUGUCAAAUAGAGACCAAAU---- ...(((((((.(((.(((((((....((....))(((.....)))......)))))))))).))))((.....))))).....---- ( -19.70, z-score = 0.02, R) >droPer1.super_4 1046865 77 + 7162766 UGUGUCCGGGAGGUAGAUAAUGUGAGGGGGAGCCGCUGUUCGAGCCGCCGCCGUUAUUACCGCCUGAAAGAACAGAU---------- (((...((((.(((.(((((((.(.((.((..(........)..)).)).))))))))))).)))).....)))...---------- ( -23.20, z-score = -0.34, R) >dp4.chr3 8986913 77 + 19779522 UGUGUCCGGGAGGUAGAUAAUGUGAGGGGGAGCCGCUGUUCGAGCCGCCGCCGUUAUUACCGCCUGAAAGAACAGAU---------- (((...((((.(((.(((((((.(.((.((..(........)..)).)).))))))))))).)))).....)))...---------- ( -23.20, z-score = -0.34, R) >droAna3.scaffold_13266 12007647 80 - 19884421 UAUGUCCGGGAGGUAGAUAAUGUGAGGGUGAGCCGCUGUUGGAGCCACCGCCGUUAUUACCGCCUG-AAAAUAGGAUAGGA------ ..((((((((.(((.(((((((((..(((...(((....))).)))..)).)))))))))).))).-......)))))...------ ( -24.21, z-score = -1.04, R) >droEre2.scaffold_4845 22085849 80 - 22589142 UGUGUCCGGGAGGUAGAUAAUGUGAGGGUGAGCCGCUGUUCGAGCCACCGCCGUUAUUACCGCCUGUGGAA-UGGACAAGA------ ..((((((((.(((.(((((((.(..((((.((((.....)).)))))).))))))))))).)))......-.)))))...------ ( -27.01, z-score = -1.33, R) >droYak2.chr2R 20681957 81 - 21139217 UGUGUCCGGGAGGUAGAUAAUGUGAGGGUGAGCCGCUGUUCGAGCCACCGCCGUUAUUACCGCCUGUAAAAUUAGACAAGA------ ..((((((((.(((.(((((((.(..((((.((((.....)).)))))).))))))))))).))))........))))...------ ( -25.50, z-score = -1.79, R) >droSec1.super_23 577571 80 - 989336 UGUGUCCGGGAGGUAGAUAAUGUGAGGGUGAGCCGCUGUUCGAGCCACCGCCGUUAUUACCGCCUGUGGAA-UGGACAAGA------ ..((((((((.(((.(((((((.(..((((.((((.....)).)))))).))))))))))).)))......-.)))))...------ ( -27.01, z-score = -1.33, R) >droSim1.chr2R 19169204 80 - 19596830 UGUGUCCGGGAGGUAGAUAAUGUGAGGGUGAGCCGCUGUUCGAGCCACCGCCGUUAUUACCGCCUGUGGAA-UGGACAAGA------ ..((((((((.(((.(((((((.(..((((.((((.....)).)))))).))))))))))).)))......-.)))))...------ ( -27.01, z-score = -1.33, R) >consensus UGUGUCCGGGAGGUAGAUAAUGUGAGGGUGAGCCGCUGUUCGAGCCACCGCCGUUAUUACCGCCUGUAAAAAUGGACAAGA______ ......((((.(((((.(((((((..((....))(((.....)))...)).)))))))))).))))..................... (-15.31 = -15.79 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:11 2011