| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,684,949 – 20,685,043 |
| Length | 94 |
| Max. P | 0.505727 |
| Location | 20,684,949 – 20,685,043 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 62.26 |
| Shannon entropy | 0.72645 |
| G+C content | 0.41112 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -7.79 |
| Energy contribution | -9.10 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505727 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20684949 94 - 21146708 UGGUUUGUGGCACGAAUAUAU-----------UUUUCAGGCGGCUUAAGGCAACACUGAGUAGUAUCAGAGUUCCAAACCACCGUACAUUAAAUGAACCAAUAUC-- (((((((..((.(....((((-----------(.((((((..((.....))..).))))).)))))..).))..)))))))........................-- ( -21.60, z-score = -1.38, R) >droEre2.scaffold_4845 22047449 103 - 22589142 UGGUUUGGGACAUGGAUAAAU-CUCUCGAAGGUUUUUAGCCGGUUUAAGGCAACACUAAGUUGUACUAAAGUUCCAAACCACAGUACCCUA-GUGAACCGAUAUC-- (((((((((((.(((..((((-((.....))))))....))).((((..(((((.....)))))..)))))))))))))))..........-.............-- ( -27.50, z-score = -1.51, R) >droYak2.chr2R 20644631 107 - 21139217 UGGUUUGUGUCACGGAUUGGUUCGCUUGUCUGCUUUUCUCCGGUUCGGGACAAGACUAAGUAGUAUCGGUGUUUCAAACCACUGUACAGUAUGCGAAACAAAAUAUC ((((((.((((.((((((((...((......))......)))))))).))))))))))....(((.(((((........)))))))).................... ( -26.50, z-score = -0.56, R) >droSec1.super_23 541651 105 - 989336 UGGUUUGUGGCACGGAUAUAUUCUCGGCAAUGUUUUCGGGCGGCUUAAGUCCACACUGAGUAGUAUCAGUGUUCCAAACCACCGUACUUUAAAUGAACCAAUAUC-- (((((((..((((.(((((...(((((...(((....((((.......))))))))))))..))))).))))..)))))))........................-- ( -30.80, z-score = -2.27, R) >droSim1.chr2R 19133451 105 - 19596830 UGGUUUGUGGCACGGAUAUAUUCUCGGCAAUGUUUUCGGGCGGCUUAAGUCCACACUGAGUAGUAUCAGUGUUCCAAACCACCGUACUUUAAAUGAACCGAUAUC-- (((((((..((((.(((((...(((((...(((....((((.......))))))))))))..))))).))))..)))))))........................-- ( -30.80, z-score = -1.95, R) >anoGam1.chr2L 41558521 100 - 48795086 UAAUUUGCUGCUCAAAUGUAUUUUUUUUAA--UGCAAAAACAUUACAACAUCGUGC-ACGAAACAUUCAAAACUUAACGAACAACAGCUUGAACGAAACUACG---- ......((((......((((((......))--))))..............(((...-.))).......................))))...............---- ( -10.40, z-score = 0.14, R) >consensus UGGUUUGUGGCACGGAUAUAUUCUCUGCAAUGUUUUCAGGCGGCUUAAGACAACACUAAGUAGUAUCAGAGUUCCAAACCACCGUACAUUAAAUGAACCAAUAUC__ (((((((.(((((.(((((...........................................))))).))))).))))))).......................... ( -7.79 = -9.10 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:10 2011