| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,636,207 – 20,636,317 |
| Length | 110 |
| Max. P | 0.636795 |
| Location | 20,636,207 – 20,636,317 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.77 |
| Shannon entropy | 0.42710 |
| G+C content | 0.46800 |
| Mean single sequence MFE | -30.87 |
| Consensus MFE | -13.92 |
| Energy contribution | -15.15 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.636795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20636207 110 + 21146708 UAUGUGCUAAACGUA--UGUGACAGCAGGUCCGAGUGAAAAGUGCAAAUUUAUCGCUGGUCUGCUCGUCUGCUGUCAAGCGAUUUGCCCUUGCCCGAAAA-AGCCACAAAAUA ..((((((...(((.--..((((((((((..(((((((..((((.........))))..)).))))))))))))))).)))....((....)).......-)).))))..... ( -33.20, z-score = -2.61, R) >droSim1.chr2R 19084856 102 + 19596830 UAUGUGCCAAACGUA--UGUGACAUCAGGUCCGAGUGAAAAGUGCAAAUUUAUCGCUGGUCU--------GCUGUCAAGCGAUUUGCCCUUGCCCGAAAA-AGCCACAAAAUG ..((((.(((((((.--..(((((.((((.((.(((((.((((....)))).))))))))))--------).))))).))).)))).....((.......-.))))))..... ( -26.70, z-score = -1.84, R) >droSec1.super_23 494907 110 + 989336 UAUGUGCCAAACGUA--UGUGACAGCAGGUCCGAGUGAAAAGUGCAAAUUUAUCGCUGGUCUGCUCGUCUGCUGUCAAGCGAUUUGCCCUUGCCCGAAAA-AGCCACAAAAUG ..((((.(((((((.--..((((((((((..(((((((..((((.........))))..)).))))))))))))))).))).)))).....((.......-.))))))..... ( -33.30, z-score = -2.60, R) >droYak2.chr2R 20597474 109 + 21139217 UAUGUGUGCUACGUA--UGUGACAGCAGGUCCGAGUGAAAAGUGCAAAUUUAUCACUAGUUUGCUGGUCUGCUGUCAAGCGAUUUGUCCUUGCCCGAAAA-UGC-UCAAAAUA ....((.((..(((.--..((((((((((.((.((..((.((((.........))))..))..)))))))))))))).))).((((........))))..-.))-.))..... ( -30.60, z-score = -1.92, R) >droEre2.scaffold_4845 22000126 102 + 22589142 UAUGUGCCAAGCGUA--UGUGACAGCAGGUCCGAGUGAAAAGUGCAAAUUUAUC--------GCUGGUCUGCUGUCAAGCGAUUUGCCCUUGCCCGAAAA-AGCCUCAAAAUA ..((.(((((((((.--..((((((((((.((.(((((.((((....)))).))--------))))))))))))))).))).)))).....)).))....-............ ( -30.80, z-score = -2.56, R) >droAna3.scaffold_13266 15372585 104 + 19884421 UAUGAGCCGAAUGUAAAUUUAUUCGCCGCUCUGC-UGGAAAGUGCAAAUUUUUCAACGGACU-----UCGGAAGUCAAGCGGUUCGACCCUGUCGGGAGGGAGCUACGUG--- (((((((.(((((......)))))(((((((((.-((((((((....)))))))).))))(.-----...).......)))))....((((......)))).))).))))--- ( -30.60, z-score = -0.51, R) >consensus UAUGUGCCAAACGUA__UGUGACAGCAGGUCCGAGUGAAAAGUGCAAAUUUAUCGCUGGUCUGCU_GUCUGCUGUCAAGCGAUUUGCCCUUGCCCGAAAA_AGCCACAAAAUA (((((.....)))))....((((((((((..(.(((((.((((....)))).))))).)........)))))))))).((((.......)))).................... (-13.92 = -15.15 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:10 2011