Sequence ID | dm3.chr2R |
---|---|
Location | 20,622,648 – 20,622,774 |
Length | 126 |
Max. P | 0.863055 |
Location | 20,622,648 – 20,622,774 |
---|---|
Length | 126 |
Sequences | 3 |
Columns | 128 |
Reading direction | forward |
Mean pairwise identity | 48.77 |
Shannon entropy | 0.69835 |
G+C content | 0.53458 |
Mean single sequence MFE | -38.37 |
Consensus MFE | -15.61 |
Energy contribution | -14.97 |
Covariance contribution | -0.65 |
Combinations/Pair | 1.57 |
Mean z-score | -1.28 |
Structure conservation index | 0.41 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.863055 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20622648 126 + 21146708 AGCAUGUACGCCUUUAGGGGUCGCACUCGACUCCCAUUGGUUAUCG-AGUAUGAACUUCAUACAUACAUAUUGCAGAAUUUGCUAGUGUCA-GCACUUGGCUGUCACAAGAGAUCUGCCUGUAGACCA .(((((((.(((..(.(((((((....))))))).)..))).....-.(((((.....))))).)))))...(((((.(((.((.(((.((-((.....)))).))).))))))))))..))...... ( -39.40, z-score = -2.00, R) >droEre2.scaffold_4784 2474366 110 - 25762168 AGCAUAAGCGCCUCUAGGGGCCGUGCCUGGUUCUGAUAGGUCUCCCCAGUAU----------GGGGAGAUAUGCUGUUUCUGCUUGUGUCAGCAGUCUUGCCGGCCGCAUUUGUAAAAUA-------- .(((...((.((....))(((((.((..(..(((((((.((((((((.....----------))))))))..((.......))...)))))).)..)..)))))))))...)))......-------- ( -42.60, z-score = -1.96, R) >droAna3.scaffold_12948 55997 99 + 692136 AGCAUACCCGCCUUUGGGGGCCGUGCCUGGAUCCCACUGGUUUCC--GGUAU----------CUUGCGAUCGUCAGCAUUUCCCACUGUCACGCGGUCGGCCUGCCGACUA----------------- .(((..((((....))))(((((((((.(((..((...))..)))--)))))----------.....((((((..(((........)))...)))))))))))))......----------------- ( -33.10, z-score = 0.13, R) >consensus AGCAUAAACGCCUUUAGGGGCCGUGCCUGGAUCCCAUUGGUUUCC__AGUAU__________CAUGCGAUAUGCAGAAUUUGCUAGUGUCA_GCGCUUGGCCGGCCGAAUA__U______________ .........(((....(((((((....)))))))....)))..............................(((.(((...(((((((.....)))).))).))).)))................... (-15.61 = -14.97 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:07 2011