| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,897,608 – 3,897,659 |
| Length | 51 |
| Max. P | 0.819595 |
| Location | 3,897,608 – 3,897,659 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 80.36 |
| Shannon entropy | 0.27428 |
| G+C content | 0.34442 |
| Mean single sequence MFE | -9.40 |
| Consensus MFE | -8.47 |
| Energy contribution | -8.03 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.819595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3897608 51 + 23011544 -----AAUCUAUUGGUAUCUAGGGUUUUGUCGUGUUCCAUACAAUUCCUUUGUACG -----.........((((..((((..((((.(((...)))))))..)))).)))). ( -10.00, z-score = -2.18, R) >droSim1.chr2L 3852602 56 + 22036055 AAAUAACUUGAUGUGUAUGUAGGGUUUUGUUGUGUGCUAUACAAUUCCUUUGUACG ..............(((((.((((....(((((((...))))))).))))))))). ( -10.00, z-score = -0.99, R) >droSec1.super_5 2000470 56 + 5866729 AAAUAUCUUAAUUGGUAUCUAGGGUUUUGUUGUGUGCCAUACAAUUCCUUUGUAUG ..............((((..((((....(((((((...)))))))))))..)))). ( -8.20, z-score = -0.56, R) >consensus AAAUAACUUAAUUGGUAUCUAGGGUUUUGUUGUGUGCCAUACAAUUCCUUUGUACG ..............((((..((((..((((.(((...))))))).))))..)))). ( -8.47 = -8.03 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:52 2011