| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,615,258 – 20,615,364 |
| Length | 106 |
| Max. P | 0.950980 |
| Location | 20,615,258 – 20,615,364 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 83.28 |
| Shannon entropy | 0.23153 |
| G+C content | 0.62369 |
| Mean single sequence MFE | -45.17 |
| Consensus MFE | -39.41 |
| Energy contribution | -39.30 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.950980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20615258 106 - 21146708 UCACUCGCUCCUUUGGUACCUUCGCUCCCUCGCUGCCUUGCUUGCCUCGCAGGACCAAAGAGGCGAGAGAGCAAGCGCACGUAAGUGUGUGUGGGUGGCGAGAGAG ((.(((((((((...........((((.((((((..(((.(((((...)))))....))).)))))).))))..((((((....))))))..))).)))))).)). ( -47.10, z-score = -2.29, R) >droSec1.super_23 481708 89 - 989336 ----------------U-CACUCGCUCCCUCGCUGCCUUGCUUGCCUCGCAGGACCAAAUGGGCGAGAGAGCGAGCGCACGGUAGUGUGUGUGGGUGGUGAGAGAG ----------------(-(.(((((((((.(((((((.((((((((((((....((....)))))))...)))))))...))))))).....))).)))))).)). ( -39.90, z-score = -1.76, R) >droSim1.chr2R 19071410 105 - 19596830 UCACUCGCUCCUUUGCU-CCUUCGCUCCCUCGCUGCCUUGCCUGCCUCGCAGGACCAAAUGGGCGAGAGAGCGAGCGCACGGUAGUGUGUGUGGGUGGCGAGAGAG ((.(((((((((..((.-...((((((.(((((.......(((((...))))).((....))))))).))))))((((((....))))))))))).)))))).)). ( -48.50, z-score = -1.90, R) >consensus UCACUCGCUCCUUUG_U_CCUUCGCUCCCUCGCUGCCUUGCUUGCCUCGCAGGACCAAAUGGGCGAGAGAGCGAGCGCACGGUAGUGUGUGUGGGUGGCGAGAGAG ........................(((.(((((..((((((((..(((((............))))).))))))((((((....))))))...))..))))).))) (-39.41 = -39.30 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:06 2011