| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,609,899 – 20,610,014 |
| Length | 115 |
| Max. P | 0.611363 |
| Location | 20,609,899 – 20,610,014 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.80 |
| Shannon entropy | 0.15623 |
| G+C content | 0.39554 |
| Mean single sequence MFE | -25.30 |
| Consensus MFE | -23.42 |
| Energy contribution | -23.62 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20609899 115 + 21146708 GCAGAAAUAAGCUCUUCGCAAAAUAUGUUCUCAACAUAUCCCCCACUUCAACAUUGUUUUCCCCGGCUUUCAGUUUAAUGAAACUGCAUGAGGCGAAAUA-----AUUUGCAUAUGGCAU ..........(((....(((((((((((.....))))))..............(((((((.(((((((((((......)))))..)).)).)).))))))-----))))))....))).. ( -20.40, z-score = -0.26, R) >droEre2.scaffold_4845 21981232 118 + 22589142 ACAAAAGUAAGCCCUUCGCCAAAUAUGUUUUCAGCAUAUCCC--ACUUCAACAUUGUUUUCGCCGGCUUUCAGUGUAAUGAAACUGCAAGAGGCGAAAUAUAGUAAUUUGCAUAUGGCAU .................((((.((((((.....))))))...--........((((((((((((..(((.((((........)))).))).))))))).)))))..........)))).. ( -28.80, z-score = -2.03, R) >droYak2.chr2R 20578025 113 + 21139217 ACAAAAGUAAGCCCCUCGCACAAUAUGUAUUCAGCAUAUCCC--ACUUCAACAUUGUUUUCGCCGGCUUUCAGUUUAAUGAAACUGCACGAGGCGAAAUA-----AUUUGCAUAUGGCAU ..........(((....(((..((((((.....))))))...--........(((((((.((((......((((((....)))))).....)))))))))-----)).)))....))).. ( -25.30, z-score = -1.45, R) >droSec1.super_23 476394 114 + 989336 GCAGAAAUAGGCUCUUCGCAAAAUAUGUUUUCAGCAUAUCCCC-ACUACAACAUUGUUUUCGCCGGCUUUCAGUUUAAUGAAACUGCAUGAGGCGAAAUA-----AUUUGCAUAUGGCUU ........(((((....(((((((((((.....))))))....-.............(((((((..(...((((((....))))))...).)))))))..-----.)))))....))))) ( -26.30, z-score = -0.97, R) >droSim1.chr2R 19065739 114 + 19596830 GCAGAAAUAGGCUCUUCGCAAAAUAUGUUUUCAGCAUAUCCCC-ACUUCAACAUUGUUUUCGCCGGCUUUCAGUUUAAUGAAACUGCAUGAGGCGAAAUA-----AUUUGCAUAUGGCAU ((.(((........)))(((((((((((.....))))))....-.............(((((((..(...((((((....))))))...).)))))))..-----.))))).....)).. ( -25.70, z-score = -0.72, R) >consensus GCAGAAAUAAGCUCUUCGCAAAAUAUGUUUUCAGCAUAUCCCC_ACUUCAACAUUGUUUUCGCCGGCUUUCAGUUUAAUGAAACUGCAUGAGGCGAAAUA_____AUUUGCAUAUGGCAU ..........(((....(((((((((((.....))))))..................(((((((.(((((((......)))))..))....)))))))........)))))....))).. (-23.42 = -23.62 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:05 2011