| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,608,104 – 20,608,199 |
| Length | 95 |
| Max. P | 0.500000 |
| Location | 20,608,104 – 20,608,199 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 69.95 |
| Shannon entropy | 0.44137 |
| G+C content | 0.34991 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -8.55 |
| Energy contribution | -9.55 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 20608104 95 + 21146708 ----------------------UCAAAUAAAACUACAUUUUAAAUAGCAACUCUUGUUCGAUCGAAUAGUGCUAUGAACGCGUGGGAAUCAAAUCUCUGUUUAUCUACCAAUUAUUU ----------------------..((((((.............((((((....((((((....))))))))))))(((((...((((......))))))))).........)))))) ( -12.90, z-score = -0.43, R) >droEre2.scaffold_4845 21979584 116 + 22589142 AGCUGCCGGCAUUCUGGAUUAACCUUUUGAAACUAAAUUCUUAAUAGUGAUUAUUGUUAGAUCAAACAGUGCUUCCAGCGCACGGCAG-CAAAUCGCUGUUUAUCUACCAAUUAUUU .(((((((((...(((((...((..(((((..((((.....((((....))))...)))).)))))..))...))))).)).))))))-)........................... ( -30.50, z-score = -2.74, R) >droSec1.super_23 474659 88 + 989336 -----------------------------UCUACACAUUUUAAAUAGCAACUUUUGUUCGAUCCAAUAGUGCUAUGAACGCGUGGGAAUCAAAUCCCUGCUUAUCUACCAAUUAUUU -----------------------------..............((((((.((.(((.......))).))))))))....(((.((((......)))))))................. ( -16.10, z-score = -1.99, R) >droSim1.chr2R 19064018 88 + 19596830 -----------------------------UCUACACAUUUUAAAUAGCAACUUUUGUUCGAUCCAAUAGUGCUAUGAACGCGUGGGAAUCAAAUCCCUGCUUAUCUACCAAUUAUUU -----------------------------..............((((((.((.(((.......))).))))))))....(((.((((......)))))))................. ( -16.10, z-score = -1.99, R) >consensus _____________________________AAAACACAUUUUAAAUAGCAACUUUUGUUCGAUCCAAUAGUGCUAUGAACGCGUGGGAAUCAAAUCCCUGCUUAUCUACCAAUUAUUU ...........................................((((((...((((......))))...))))))....(((.((((......)))))))................. ( -8.55 = -9.55 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:04 2011