| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,606,776 – 20,606,871 |
| Length | 95 |
| Max. P | 0.667304 |
| Location | 20,606,776 – 20,606,871 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 82.00 |
| Shannon entropy | 0.32428 |
| G+C content | 0.40093 |
| Mean single sequence MFE | -18.32 |
| Consensus MFE | -11.67 |
| Energy contribution | -11.71 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20606776 95 - 21146708 GGAAACUCGAUACUGCACACUAUCAACACAAGUAGACGUGCGAAGAUAUGACUUUUGAAUAAUAUUAAAUUUGGAGGGCAAUAGGGAUUGGGUAU ....(((((((.((((((.((((........))))..)))).......((.((((..(((........)))..)))).))...)).))))))).. ( -19.70, z-score = -2.37, R) >droEre2.scaffold_4845 21978321 93 - 22589142 -GAAACACGAUACUGCACACCACCAACGCAAGUAGAAGUGCGAGAGGUAGAUUUUUGAAUAAUAUUCAG-UUGCGAGGCAAUAAGAAUGGAGUAU -........(((((.((....(((..((((........))))...))).......(((((...)))))(-((((...))))).....)).))))) ( -14.70, z-score = -0.11, R) >droYak2.chr2R 20574888 83 - 21139217 GGAAACACGAUACUGCACACU------------AGAUGUGCGCAAAGGCGAUUUUUGAAUAAUAUUCAAUUUGGAAGGCAAUAAGGAUUGGGUAU (....).((....(((.(((.------------....))).)))....))...........(((((((((((..(......)..))))))))))) ( -15.90, z-score = -1.55, R) >droSec1.super_23 473359 95 - 989336 GGAAACUCGAUACUGCACACUAUCAACACAAGCAGACGUGCGAGGAGACGACUUUUGAAUAAUAUUAAAUUUGGAAGGCAAUAGGGAUUGGGUAU ....(((((((.((((...............)))).(.(((..(....)..((((..(((........)))..)))))))...)..))))))).. ( -20.66, z-score = -2.79, R) >droSim1.chr2R 19062737 95 - 19596830 GGAAACUCGAUACUGCACACUAUCAACACAAGCAGACGUGCGAGGAGACGACUUUUGAAUAAUAUUAAAUUUGGAAGGCAAUAGGGAUUGGGUGU ....(((((((.((((...............)))).(.(((..(....)..((((..(((........)))..)))))))...)..))))))).. ( -20.66, z-score = -2.11, R) >consensus GGAAACUCGAUACUGCACACUAUCAACACAAGCAGACGUGCGAGGAGACGACUUUUGAAUAAUAUUAAAUUUGGAAGGCAAUAGGGAUUGGGUAU ....(((((((.((((((...................))))..........((((..(((........)))..))))......)).))))))).. (-11.67 = -11.71 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:03 2011