Locus 5474

Sequence ID dm3.chr2R
Location 20,597,532 – 20,597,644
Length 112
Max. P 0.676728
window7511

overview

Window 1

Location 20,597,532 – 20,597,644
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 93.93
Shannon entropy 0.11050
G+C content 0.57910
Mean single sequence MFE -30.76
Consensus MFE -26.36
Energy contribution -27.56
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.86
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.39
SVM RNA-class probability 0.676728
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 20597532 112 - 21146708
CGCCCCCCGCGAAUCCUCUCCAGCUCCGGGUGAGCUGCUCCCACGUUGACUGACAAGUCUUUGUGCAAACAGACGCACAAUCCCACUCACAAACACACUCGCAAACAGGGCC
.((((...((((........((((((.....)))))).......(((((((....)))).((((((........))))))...........)))....)))).....)))). ( -31.40, z-score =  -1.87, R)
>droEre2.scaffold_4845 21968933 112 - 22589142
CGCCCUGCGCGAAUCCUCUCCAGCUCCGGGUGAGCUGCUCCCACGUUGACUGACAAGUCUUUGUGCAAACAGACGCACAAUCCCACUCACAAACACACUCGCAAACAGGGCC
.((((((.((((........((((((.....)))))).......(((((((....)))).((((((........))))))...........)))....))))...)))))). ( -36.20, z-score =  -2.80, R)
>droYak2.chr2R 20565289 102 - 21139217
----------GAAUCCUCUCCAGCUCCGGUUGAGCUGCUCCCACGUUGACUGACAAGUCUUUGUGCAAACAGACGCACAAUCCCACUCACAAACACACUCGCAAAUAGGGCC
----------..........((((((.....))))))..(((.....((((....)))).((((((........))))))...........................))).. ( -23.00, z-score =  -0.73, R)
>droSec1.super_23 464232 112 - 989336
CGCCCCCCGCGAAUCCUCUCCAGCUCCGGGUGAGCUGCUCCCACGUUGACUGACAAGUCUUUGUGCAAACAGACGCACAAUCCCACUCACAAACACACUCGCACACAGGGCC
.((((...((((........((((((.....)))))).......(((((((....)))).((((((........))))))...........)))....)))).....)))). ( -31.40, z-score =  -1.74, R)
>droSim1.chr2R 19053183 112 - 19596830
CGCCCCCCGCGAAUCUUCGCCAGCUCCGGGUGAGCUGCUCCCACGUUGACUGACAAGUCUUUGUGCAAACAGACGCACAAUCCCACUCACAAACACACUCGCACACAGGGCC
.((((...((((......((.(((((.....)))))))......(((((((....)))).((((((........))))))...........)))....)))).....)))). ( -31.80, z-score =  -1.45, R)
>consensus
CGCCCCCCGCGAAUCCUCUCCAGCUCCGGGUGAGCUGCUCCCACGUUGACUGACAAGUCUUUGUGCAAACAGACGCACAAUCCCACUCACAAACACACUCGCAAACAGGGCC
.((((...((((........((((((.....)))))).......(((((((....)))).((((((........))))))...........)))....)))).....)))). (-26.36 = -27.56 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:49:02 2011