| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,584,180 – 20,584,271 |
| Length | 91 |
| Max. P | 0.563581 |
| Location | 20,584,180 – 20,584,271 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 74.65 |
| Shannon entropy | 0.46225 |
| G+C content | 0.66948 |
| Mean single sequence MFE | -41.02 |
| Consensus MFE | -24.21 |
| Energy contribution | -25.22 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20584180 91 + 21146708 GGGUGUGGAUUGGGGCCCGGGCUCGAGUCGCACU-GACCAACAA-ACCGGACUGGC--CUCGACCUCGGUCCGCC----UCCGUGUCCGCAUCCACCGG (((((((((((((((((((((.(((((..((...-(.((.....-...)).)..))--))))).)))))...)))----.))).))))))))))..... ( -41.40, z-score = -1.13, R) >droAna3.scaffold_13266 7176373 96 + 19884421 ---GGUGGUCCGGGAAUCGGGAUGGAGUGGUUUUUGGGAGGGUGAACCCUAUUUGCGGAUCCUACUCAGUCCCCCGAAUCCCGCGCCCAACCGUGCCGG ---((((((.(((((.(((((...((((((..((((.(((((....))))...).))))..)))))).....))))).))))).)))..)))....... ( -44.00, z-score = -1.73, R) >droEre2.scaffold_4845 21953419 92 + 22589142 GGAUAUGGACUGGGGUCCGGGAUCGAGUCGCACU-GACCAACUGCAGCGGACUGCA--AUCGACCUCGGUCCGCC----UCCGGGUCCACAGCCGCCGG ((....((.(((((..(((((...(.(((.....-)))).......((((((((..--........)))))))).----)))))..)).))))).)).. ( -36.90, z-score = -0.15, R) >droYak2.chr2R 20551276 92 + 21139217 GGAUAUGGAUUGGGGCCCGGGAUCGAGUCACACC-GACCAACUGCAGCGGACUGGA--GUCGAUCUCGGUCCGCC----UCCGUGUCCGCAUCCGCCGG (((((((((..((((.((((((((((.((...((-(.(........))))....))--.)))))))))).)).))----)))))))))((....))... ( -43.00, z-score = -1.70, R) >droSec1.super_23 449561 91 + 989336 GGAUAUGGAUUGGGGCCCGGGAUCGAGUCGCACU-GACCAACAA-ACCGGACGGGC--CUCGACCUCGGUCCGCC----UCCGUGUCCGCAUCCGCCGG (((((((((..((((.(((((.(((((..((.((-(.((.....-...)).)))))--))))).))))).)).))----)))))))))((....))... ( -40.60, z-score = -1.03, R) >droSim1.chr2R 19039490 91 + 19596830 GGAUAUGGAUUGGGGCCCGGGAUCGAGUCGCACU-GACCAACAA-ACCGGACGGGC--CUCGACCUCGGUCCGCC----UCCGUGUCCGCACCCACCGG (((((((((..((((.(((((.(((((..((.((-(.((.....-...)).)))))--))))).))))).)).))----)))))))))........... ( -40.20, z-score = -1.19, R) >consensus GGAUAUGGAUUGGGGCCCGGGAUCGAGUCGCACU_GACCAACAA_ACCGGACUGGC__CUCGACCUCGGUCCGCC____UCCGUGUCCGCAUCCGCCGG (((((((((..((((.(((((.(((((((......)))........((.....))....)))).))))).)).))....)))))))))........... (-24.21 = -25.22 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:57 2011