| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,880,752 – 3,880,856 |
| Length | 104 |
| Max. P | 0.764566 |
| Location | 3,880,752 – 3,880,856 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 70.92 |
| Shannon entropy | 0.45117 |
| G+C content | 0.35950 |
| Mean single sequence MFE | -19.40 |
| Consensus MFE | -12.38 |
| Energy contribution | -11.62 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.764566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3880752 104 + 23011544 AGCAAAUAAAAGCCGACUGAUAAGGUCUGCAAACUUGAUGUGAAUAGUUAAAAAAUCAAAUCGAUUAAAUAGAACGCAAUGAUAGAAUUAUGUGACGCACGUGA----------- .((........((.((((.....)))).))....(((((.(((............))).)))))...........))..........(((((((...)))))))----------- ( -15.80, z-score = -0.00, R) >droEre2.scaffold_4929 3932651 113 + 26641161 AGCAAAUAAAAGUAGACUGAUUAGGUCUGCGAAACCGAUGUGAACAGUUAGA-AAUCAAAUCGGUUUGAUAAAACACAGUAAAAG-AUUGCGUGACGCACAUGACAAUCAAUCAA .((........(((((((.....))))))).((((((((.(((.........-..))).))))))))...........))....(-((((((((.....)))).)))))...... ( -28.40, z-score = -3.02, R) >droSec1.super_5 1982693 80 + 5866729 AACAAAUAAAAGGCGACUAAUAAGGUCUGCGAA--------------------AAUCAAAUCAAUUUGAUAGAACGCAACGAUAGAAUCGUGUGACGCAC--------------- ..............((((.....))))((((..--------------------.((((((....))))))....((((.((((...)))))))).)))).--------------- ( -16.40, z-score = -2.01, R) >droSim1.chr2L 3835947 99 + 22036055 AACAAAUAAAAGGCGACUGAUAAGGUCUGCGAACUUGAUGUGAACAGUUAAA-AAUUAAAUCGAUUUGAUAGAACGCAAUGAUAGUAUCGUGUGACGCAC--------------- ............((((((((((..(((((((...((((((....)).)))).-.((((((....))))))....))))..)))..))))).))..)))..--------------- ( -17.00, z-score = -0.07, R) >consensus AACAAAUAAAAGGCGACUGAUAAGGUCUGCGAACUUGAUGUGAACAGUUAAA_AAUCAAAUCGAUUUGAUAGAACGCAAUGAUAGAAUCGUGUGACGCAC_______________ ..............((((.....))))((((.......................((((((....))))))....(((.((((.....))))))).))))................ (-12.38 = -11.62 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:51 2011