| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,568,641 – 20,568,752 |
| Length | 111 |
| Max. P | 0.957413 |
| Location | 20,568,641 – 20,568,752 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 62.15 |
| Shannon entropy | 0.66027 |
| G+C content | 0.38959 |
| Mean single sequence MFE | -19.72 |
| Consensus MFE | -7.52 |
| Energy contribution | -9.04 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.957413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20568641 111 - 21146708 AAAUUCCAAGUU------AAAGCCCUCUUAACCUGUCAUUCGAUUCCGAAUGGCGCACCUGAAAUGCAUUAAGAGACAUCCACCAAAAAAAGUGAUAACGAAACCUCAUGAAUUAUU- .(((((...(((------(.....(((((((...((((((((....))))))))(((.......))).))))))).....(((........))).))))((....))..)))))...- ( -23.70, z-score = -3.70, R) >droSim1.chr2R 19024024 111 - 19596830 AAACUCCAAGUU------AAAGCCCUCUUAACCUGUCAUUCGAGUCAGAAUGGCGCACCUGAAAUGCAUUAAGGGGCACCCGCCAAAAAAAGUGAUAACGAAACCCCAUGAAUUAUU- .........(((------(..((((.(((((...(((((((......)))))))(((.......))).)))))))))...(((........))).))))..................- ( -26.00, z-score = -2.25, R) >droYak2.chr2R 20535516 110 - 21139217 AAAACCCAAGUU------AGACACCUCUUAACCUGUCAAUCGAUGCGGAAUGCCGCACCCAAAGUGCAUUAAGUUCCAGCCACC-AAAAAAGUGAUAACAAAACGCCAUAAAUUAUU- .........(((------(..(((..........(((....)))(((((((...((((.....)))).....))))).))....-......))).))))..................- ( -16.30, z-score = -1.22, R) >droEre2.scaffold_4845 21938039 111 - 22589142 GAAAUUCCAGUUCUAUAAAGACCCAGCUUAAGCUGCCAUUCUAUUCAGAAUGGCGCACCCAAAAUGCAUUAAGUUCCAGCCACC-AAAAAAGUGAU-----AACGCCAUAAAUAAUU- .........(((.............(((..((((((((((((....))))))))(((.......)))....))))..)))(((.-......)))..-----))).............- ( -19.70, z-score = -2.35, R) >droAna3.scaffold_13266 7160476 91 - 19884421 ----------------AAAGACUAUGCUACAUUGAUUUUCCCAUU---AAUAGAGAACCUGGAAAACAUGGGCAUCUAAUAGUG-AUAAGACUA-------GAAGCCAUUAAUACAUC ----------------.........(((...(((.((((..((((---(.((((...((((.....)).))...)))).)))))-..)))).))-------).)))............ ( -12.90, z-score = -0.15, R) >consensus AAAAUCCAAGUU______AGACCCCUCUUAACCUGUCAUUCGAUUCAGAAUGGCGCACCUGAAAUGCAUUAAGAUCCAGCCACC_AAAAAAGUGAUAAC_AAACGCCAUAAAUUAUU_ ........................(((((((...(((((((......)))))))(((.......))).)))))))........................................... ( -7.52 = -9.04 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:57 2011