| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,565,870 – 20,565,946 |
| Length | 76 |
| Max. P | 0.511646 |
| Location | 20,565,870 – 20,565,946 |
|---|---|
| Length | 76 |
| Sequences | 4 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 74.72 |
| Shannon entropy | 0.40428 |
| G+C content | 0.39567 |
| Mean single sequence MFE | -10.92 |
| Consensus MFE | -6.11 |
| Energy contribution | -6.05 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20565870 76 - 21146708 UAACUCCAUUCCACCUCGCUUUCAGCUAAAGCGAAUAUGUUUUAGCCCAUGUACAGAUCAAACCAUAUACAGAGUA ..((((.........(((((((.....)))))))(((((........)))))...................)))). ( -12.00, z-score = -2.34, R) >droSim1.chr2R 19021318 67 - 19596830 ---------UCUACCUCGCUUCCAGCUAAAGCGAAUAAGUUUUAGCCCAUGUACAGAUCAAACCAUAUACAGGGUA ---------..(((((........((((((((......))))))))...((((..............))))))))) ( -12.74, z-score = -1.60, R) >droSec1.super_23 431515 67 - 989336 ---------UCUACCUCGCUUCCAGCUAAAGCGAAUAAGUUUUAGCCCAUGUACAGAUCAAACCAUAUACAGGGUA ---------..(((((........((((((((......))))))))...((((..............))))))))) ( -12.74, z-score = -1.60, R) >droYak2.chr2R 20532651 71 - 21139217 CUAUUCCUUUCCAACUCGUCUCUAGCUUAAGUAAAUACGUAUAAACCCAUGUACAGAUCA----GUAAUCAGAAU- .............(((.((((...((....))......(((((......))))))))).)----)).........- ( -6.20, z-score = -0.55, R) >consensus _________UCCACCUCGCUUCCAGCUAAAGCGAAUAAGUUUUAGCCCAUGUACAGAUCAAACCAUAUACAGAGUA ........................((((((((......)))))))).............................. ( -6.11 = -6.05 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:55 2011