| Sequence ID | dm3.chr2R |
|---|---|
| Location | 20,556,987 – 20,557,068 |
| Length | 81 |
| Max. P | 0.987997 |
| Location | 20,556,987 – 20,557,068 |
|---|---|
| Length | 81 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 70.74 |
| Shannon entropy | 0.52345 |
| G+C content | 0.38491 |
| Mean single sequence MFE | -17.82 |
| Consensus MFE | -12.56 |
| Energy contribution | -11.60 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.30 |
| SVM RNA-class probability | 0.987997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 20556987 81 - 21146708 ------------AAAAUGUGGAA--CGUGUUCCUAGCUAAAGUUGUGGAAACUGG-AAAAGUCUGUUCUAUAGCUGUGUUGUUUACCUAAUGAAUG ------------.......((((--....))))((((...((((((((((...((-(....))).))))))))))..))))............... ( -17.00, z-score = -2.33, R) >droEre2.scaffold_4845 21926486 93 - 22589142 CAAAUGGUACCCGUCCUAUGGAA--CGUGUUCCUAGCUAAAGUUGUGGAAACUGG-AAAAGACUGUUCUACAGCUGUGUUGUUUACCUACUGAAUC .....((((..(.......((((--....)))).(((...((((((((((...(.-......)..))))))))))..))))..))))......... ( -21.70, z-score = -1.22, R) >droYak2.chr2R 20523656 94 - 21139217 CAAAUGGUACCCGUCCUGUGGAA--CGUGUUCCUAGCUAAUGUUGUGGAAACUGGAAAAAGACUGUUCUACAGCUGUGUUGUUUACCUACUGACUG .....((((..((..((((((((--(...((((((((....)))).)))).((......))...)))))))))......))..))))......... ( -22.20, z-score = -1.29, R) >droSec1.super_23 422655 81 - 989336 ------------AAAAUGUGGAA--CGUGUUCCUAGCUAAAGUUGUGGAAACUGG-AAAAGUCUGUUCUAUAGCUGUGUUGUUUACCUAAUGAAUG ------------.......((((--....))))((((...((((((((((...((-(....))).))))))))))..))))............... ( -17.00, z-score = -2.33, R) >droSim1.chr2R 19012199 81 - 19596830 ------------AAAAUGUGGAA--CGUGUUCCUAGCUAAAGUUGUGGAAACUGG-AAAAGUCUGUUCUAUAGCUGUGUUGUUUACCUAAUGAAUG ------------.......((((--....))))((((...((((((((((...((-(....))).))))))))))..))))............... ( -17.00, z-score = -2.33, R) >droMoj3.scaffold_6496 4092963 84 - 26866924 -------AAACUAUUGCGUAAAAAUCACUUUUUUAAC-AAAAUAUCAGCUCCUUAACAAAAUAUGUUGCUGUGUUGUGUUGCCGACUAAGUG---- -------..................(((((...((((-(.((((.((((.....((((.....)))))))))))).)))))......)))))---- ( -12.00, z-score = -0.55, R) >consensus ____________AAAAUGUGGAA__CGUGUUCCUAGCUAAAGUUGUGGAAACUGG_AAAAGUCUGUUCUAUAGCUGUGUUGUUUACCUAAUGAAUG ...................((((......))))((((...((((((((((...(........)..))))))))))..))))............... (-12.56 = -11.60 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:48:53 2011